{"id":35762857,"url":"https://github.com/bionetslab/enquire_web","last_synced_at":"2026-01-07T00:00:25.198Z","repository":{"id":232708249,"uuid":"633365547","full_name":"bionetslab/enquire_web","owner":"bionetslab","description":"Web tool extension for the ENQUIRE gene-mesh term PubMed mining application","archived":false,"fork":false,"pushed_at":"2024-08-08T16:59:42.000Z","size":20981,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2024-08-08T19:54:47.038Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bionetslab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-04-27T10:45:38.000Z","updated_at":"2024-08-08T16:59:47.000Z","dependencies_parsed_at":null,"dependency_job_id":"b0cf7e9a-e2ec-4938-9551-750bdaf2b916","html_url":"https://github.com/bionetslab/enquire_web","commit_stats":null,"previous_names":["bionetslab/enquire_web"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/bionetslab/enquire_web","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bionetslab%2Fenquire_web","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bionetslab%2Fenquire_web/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bionetslab%2Fenquire_web/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bionetslab%2Fenquire_web/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bionetslab","download_url":"https://codeload.github.com/bionetslab/enquire_web/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bionetslab%2Fenquire_web/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28230229,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2026-01-06T02:00:07.049Z","response_time":56,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-01-07T00:00:07.803Z","updated_at":"2026-01-07T00:00:25.192Z","avatar_url":"https://github.com/bionetslab.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"\nNote: You can run ENQUIRE-Web by simply navigation to https://enquire-web.net. If you would like to host ENQUIRE-Web locally instead, please follow the instructions as specified in the rest of this README.\n\n# Installation\n\nInstall conda environment as follows (there also exists a requirements.txt)\n```bash\nconda create --name enquire-web python=3.7\nconda activate enquire-web\npip install celery Flask Flask-APScheduler flask-sqlalchemy Flask-WTF matplotlib mygene ndex2 networkx numpy pandas pcst-fast requests rq seaborn shortuuid WTForms pcst_fast\n```\n\nInstalling Redis\n```bash\nMacOS: brew install redis\n\n* For Windows and Linux operating systems, please refer to the official Redis documentation at: https://redis.io/docs/getting-started/installation/\n```\n\n\n# Hosting ENQUIRE-Web locally\n\n1. First start redis server:\n(Redis server has to be run before celery. Otherwise, celery will throw error.)\n```bash\nSimply type 'redis-server' on the terminal. (Redis runs on port 6379 by default)\n```\n\n2. Then start celery server:\n```\nSimply type 'celery -A app.celery worker --loglevel=info' on the terminal.\n\nYou should see a statement that says 'Connected to redis://localhost:6379/'\n```\n\n3. Finally, run the web app:\n```\nType 'flask -A app.py --debug run' on the terminal.\n\nPort: 5000 (that is, the web app can be accessed locally at: http://127.0.0.1:5000/)\n\nWe can change the port that the Flask app is running on by changing \"app.run()\" in app.py to \"app.run(port='ENTER_DESIRED_PORT_NUMBER')\".\n```\n\n\n# Citing ENQUIRE-Web\n\nPlease cite ENQUIRE-Web as follows:\n- Will be updated once available.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbionetslab%2Fenquire_web","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbionetslab%2Fenquire_web","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbionetslab%2Fenquire_web/lists"}