{"id":43932698,"url":"https://github.com/bionf/phyloprofile-data","last_synced_at":"2026-02-07T00:18:50.482Z","repository":{"id":114518779,"uuid":"119545128","full_name":"BIONF/phyloprofile-data","owner":"BIONF","description":"Data files for PhyloProfile 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include data for two demo datasets used by PhyloProfile.  \nThese datasets are also available through [**Bioconductor ExperimentHub**](https://bioconductor.org/packages/release/bioc/html/ExperimentHub.html) via the **PhyloProfileData** package (source code can be found [here](https://github.com/BIONF/PhyloProfileData)).\n\nThey are used to demonstrate how to run PhyloProfile and analyze its results.  \nBriefly, it contains phylogenetic profiles, FASTA sequences, and domain annotations for two experimental datasets:\n\n- **AMPK–TOR pathway dataset:**  \n  147 human proteins involved in the AMPK–TOR pathway across 83 species.\n- **Arthropoda dataset:**  \n  1,011 BUSCO arthropoda ortholog groups across 88 species spanning the three domains of life.\n\n---\n\n## Other Experimental Data\n\nThe **`otherExpTestData`** folder contains two additional experimental datasets.  \nThese can be downloaded and manually provided to PhyloProfile for testing or analysis.\n\n---\n\n## Demo Input Files\n\nThe **`demoInput`** folder includes several example input files in various formats.  \nTo learn how to correctly format input data for PhyloProfile, please refer to our [**Wiki page**](https://github.com/BIONF/PhyloProfile/wiki/Input-Data).\n\n---\n\n## References\n\nNgoc-Vinh Tran, Bastian Greshake Tzovaras, Ingo Ebersberger, PhyloProfile: dynamic visualization and exploration of multi-layered phylogenetic profiles, Bioinformatics, Volume 34, Issue 17, 01 September 2018, Pages 3041–3043, https://doi.org/10.1093/bioinformatics/bty225\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbionf%2Fphyloprofile-data","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbionf%2Fphyloprofile-data","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbionf%2Fphyloprofile-data/lists"}