{"id":18666767,"url":"https://github.com/bionode/bionode-gff","last_synced_at":"2025-07-31T05:07:53.027Z","repository":{"id":42684734,"uuid":"42521980","full_name":"bionode/bionode-gff","owner":"bionode","description":"GFF parser","archived":false,"fork":false,"pushed_at":"2022-11-10T06:46:38.000Z","size":149,"stargazers_count":3,"open_issues_count":7,"forks_count":3,"subscribers_count":15,"default_branch":"master","last_synced_at":"2025-04-06T16:41:12.775Z","etag":null,"topics":["bioinformatics","bionode","nodejs","parser","tools"],"latest_commit_sha":null,"homepage":null,"language":"JavaScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bionode.png","metadata":{"files":{"readme":"README.MD","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":null,"code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-09-15T13:44:01.000Z","updated_at":"2020-11-20T18:04:24.000Z","dependencies_parsed_at":"2022-08-26T08:10:46.319Z","dependency_job_id":null,"html_url":"https://github.com/bionode/bionode-gff","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bionode%2Fbionode-gff","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bionode%2Fbionode-gff/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bionode%2Fbionode-gff/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bionode%2Fbionode-gff/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bionode","download_url":"https://codeload.github.com/bionode/bionode-gff/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248495828,"owners_count":21113706,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","bionode","nodejs","parser","tools"],"created_at":"2024-11-07T08:33:59.836Z","updated_at":"2025-04-11T23:33:08.569Z","avatar_url":"https://github.com/bionode.png","language":"JavaScript","funding_links":[],"categories":[],"sub_categories":[],"readme":"\u003cp align=\"center\"\u003e\n  \u003ca href=\"http://bionode.io\"\u003e\n    \u003cimg height=\"200\" width=\"200\" title=\"bionode\" alt=\"bionode logo\" src=\"https://rawgithub.com/bionode/bionode/master/docs/bionode-logo.min.svg\"/\u003e\n  \u003c/a\u003e\n  \u003cbr/\u003e\n  \u003ca href=\"http://bionode.io/\"\u003ebionode.io\u003c/a\u003e\n\u003c/p\u003e\n\n\n# bionode-gff\n\n\u003e Node.js module for parsing gff files\n\n[![npm](https://img.shields.io/npm/v/bionode-gff.svg?style=flat-square)](http://npmjs.org/package/bionode-gff)\n[![Travis](https://img.shields.io/travis/bionode/bionode-gff.svg?style=flat-square)](https://travis-ci.org/bionode/bionode-gff)\n[![Coveralls](https://img.shields.io/coveralls/bionode/bionode-gff.svg?style=flat-square)](http://coveralls.io/r/bionode/bionode-gff)\n[![Dependencies](http://img.shields.io/david/bionode/bionode-gff.svg?style=flat-square)](http://david-dm.org/bionode/bionode-gff)\n[![npm](https://img.shields.io/npm/dt/bionode-gff.svg?style=flat-square)](https://www.npmjs.com/package/bionode-gff)\n[![Gitter](https://img.shields.io/gitter/room/nwjs/nw.js.svg?style=flat-square)](https://gitter.im/bionode/bionode)\n\n\n## Install\n\nYou need to install the latest Node.JS first, please check [nodejs.org](http://nodejs.org) or do the following:\n\n```bash\n# Ubuntu\nsudo apt-get install npm\n# Mac\nbrew install node\n# Both\nnpm install -g n\nn stable\n```\n\nTo use `bionode-gff` as a command line tool, you can install it globally with `-g`.\n\n```bash\nnpm install bionode-gff -g\n```\n\nOr, if you want to use it as a JavaScript library, you need to install it in your local project folder inside the `node_modules` directory by doing the same command **without** `-g`.\n\n```bash\nnpm i bionode-gff # 'i' can be used as shortcut to 'install'\n```\n\n\n## Usage\n\nIf you are using ```bionode-gff``` with Node.js, you can require the module:\n\n```js\nvar gff = require('bionode-gff')\n GFF.read(filePath).on('data',onFeatures).on('end', done);\n\n function onFeature(feature){\n         console.log(feature.seqid);\n         console.log(feature.source);\n         console.log(feature.type);\n         console.log(feature.start);\n         console.log(feature.end);\n         console.log(feature.score || '.');\n         console.log(feature.strand || '?');\n         console.log(feature.phase || '.');\n         console.log(feature.attributes);\n }\n\n function done(){\n console.log('done');\n }\n```\n\n\n## Documentation\n\nCheck our documentation at [doc.bionode.io](http://doc.bionode.io) or do:\n\n```bash\nbionode-gff --help\n```\n\n\n## Contributing\n\nWe welcome all kinds of contributions at all levels of experience, please read the [CONTRIBUTING.md](CONTRIBUTING.md) to get started!\n\n\n## Communication channels\n\nDon't be shy! Come talk to us :smiley:\n\n* **Email** [mail@bionode.io](mailto:mail@bionode.io)\n* **Chat room** [http://gitter.im/bionode/bionode](http://gitter.im/bionode/bionode)\n* **IRC** #bionode on Freenode\n* **Twitter** [@bionode](http://twitter.com/@bionode)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbionode%2Fbionode-gff","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbionode%2Fbionode-gff","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbionode%2Fbionode-gff/lists"}