{"id":44454452,"url":"https://github.com/biosimulators/bsvs","last_synced_at":"2026-02-12T17:09:20.102Z","repository":{"id":269488637,"uuid":"907571118","full_name":"biosimulators/bsvs","owner":"biosimulators","description":"A high-level Python client for the Biological Simulation Verification Service REST API.","archived":false,"fork":false,"pushed_at":"2024-12-23T23:00:52.000Z","size":14420,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-09-09T16:39:25.723Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/biosimulators.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2024-12-23T22:37:55.000Z","updated_at":"2024-12-23T23:00:55.000Z","dependencies_parsed_at":"2024-12-25T00:50:23.345Z","dependency_job_id":null,"html_url":"https://github.com/biosimulators/bsvs","commit_stats":null,"previous_names":["biosimulators/bsvs"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/biosimulators/bsvs","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/biosimulators%2Fbsvs","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/biosimulators%2Fbsvs/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/biosimulators%2Fbsvs/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/biosimulators%2Fbsvs/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/biosimulators","download_url":"https://codeload.github.com/biosimulators/bsvs/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/biosimulators%2Fbsvs/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29373841,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-12T08:51:36.827Z","status":"ssl_error","status_checked_at":"2026-02-12T08:51:26.849Z","response_time":55,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-02-12T17:09:19.422Z","updated_at":"2026-02-12T17:09:20.091Z","avatar_url":"https://github.com/biosimulators.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/1bVtTmbMLnfFBv44rPwmBFsHvpX7woDWn?usp=sharing)\n![Deployment Pipeline](https://github.com/biosimulators/bsvs/actions/workflows/pipeline.yml/badge.svg)\n[![Documentation](https://readthedocs.org/projects/bsvs/badge/?version=latest)](https://bio-compose.readthedocs.io/en/latest/)\n\n# **Biological Simulation Verification Service (`bsvs`)**: A high-level Python client for the Biological Simulation Verification Service REST API.\n\n## **Documentation**: \n\nThe complete `bsvs` documentation can be found here: https://bsvs.readthedocs.io/en/latest/\n\n## **Getting Started**:\n\nWe recommend using poetry to install this tooling. Installation of this tooling can be performed using PyPI as such:\n\n```bash\npip install bsvs\n```\n\n#### Alternatively, **the REST API can be accessed via Swagger UI here: [https://biochecknet.biosimulations.org/docs](https://biochecknet.biosimulations.org/docs)**\n\n### **_IMPORTANT NOTES_**:\n- Poetry is used as the environment manager. Poetry uses a globally referenced configuration whose cache setup may lead to permission errors when running `poetry install`. In the event that such errors exist, run the following:\n```bash\npoetry config cache-dir ~/poetry-cache\nmkdir -p ~/poetry-cache\nchmod -R u+w ~/poetry-cache\n\n# then install the project:\npoetry install\n```\n- If you are using the jupyter notebooks found within `/tests`, you must link the environment (in this case `poetry`) to the notebook's kernel. Take the following steps to ensure such linking occurs:\n```bash\n# in the case of running (poetry config virtualenvs.in-project true), the env name will be .venv\npoetry run python -m ipykernel install --user --name=$ENV_NAME --display-name \"$ENV_NAME\"\n```\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiosimulators%2Fbsvs","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbiosimulators%2Fbsvs","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiosimulators%2Fbsvs/lists"}