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status](https://ci.appveyor.com/api/projects/status/w2paw56r8mju1k2h/branch/master?svg=true)](https://ci.appveyor.com/project/bldrvnlw/nptsne/branch/master)\n\n\n[![Documentation Status](https://readthedocs.org/projects/nptsne/badge/?version=stable)](https://nptsne.readthedocs.io/en/release-1.1.0/)\n\n# nptsne\n\n**nptsne** is a numpy compatible python binary package that offers a number of APIs for fast tSNE calculation and HSNE modelling.\n\nFor more detail see the [documentation for the current release - 1.1.0](https://nptsne.readthedocs.io/en/release-1.1.0)\n\nCurrently python 3.6, 3.7, and 3.8 are supported on Windows, Mac and Linux using [cibuildwheel](https://cibuildwheel.readthedocs.io/en/stable/)\n\n## Demo software using nptsne\n\nCan be downloaded from [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4275752.svg)](https://doi.org/10.5281/zenodo.4275752)\n\n## Building\n\nThe *requirements.txt* and the *pyproject.toml* contain the list of build requirements.\n\n- Add the biovault conan remote (for prebuilt packages):\n```\nconan remote add conan-biovault http://cytosplore.lumc.nl:8081/artifactory/api/conan/conan-local\n```\n\n#### Development build \u0026 install using python\n```shell\npip install -v -e .\n````\n\nThis will automatically create a *build* subdirectory build the bindings and create an .egg-link file in the current python environment.\n\nOn Windows a *_nptsne.sln* file will be present under the build directory\n\n#### Alternative manual Windows build\n\n - Make a build directory below the HDILib project root.\n    For example: *./_build_release* or *./_build_debug*\n    (\u003cu\u003ewhen using conan the source directories are shared but\n    separate build directories should be used for release and debug.\u003c/u\u003e)\n - In the python environment (with conan and cmake accessible)\n cd to the build directory and issue the following (for VisualStudio 2017):\n```\ncmake .. -G \"Visual Studio 15 2017 Win64\" -DCMAKE_BUILD_TYPE=Release -DNPTSNE_BUILD_WITH_CONAN=ON\n```      \n    (*Note: this assumes that the build dir is one level down from the project root.\n    The default of NPTSNE_BUILD_WITH_CONAN is OFF*)\n - If all goes well Conan will have installed the dependencies in its cache and\n created the required defines for the Cmake configuration.\n Open the .sln in VisualStudio and build ALL_BUILD for Release or Debug matching the CMAKE_BUILD_TYPE.\n     On Windows the result of the build are three *.lib files\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiovault%2Fnptsne","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbiovault%2Fnptsne","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiovault%2Fnptsne/lists"}