{"id":20956478,"url":"https://github.com/bluebrain/bluenaas-singlecell","last_synced_at":"2025-05-14T05:31:48.235Z","repository":{"id":144629665,"uuid":"537375252","full_name":"BlueBrain/BlueNaaS-SingleCell","owner":"BlueBrain","description":"BlueNaaS Single Cell","archived":true,"fork":false,"pushed_at":"2025-02-26T13:17:01.000Z","size":2337,"stargazers_count":1,"open_issues_count":1,"forks_count":4,"subscribers_count":6,"default_branch":"main","last_synced_at":"2025-03-16T18:04:41.690Z","etag":null,"topics":["emodel","experiment","neuron"],"latest_commit_sha":null,"homepage":"","language":"JavaScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BlueBrain.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS.txt","dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-09-16T08:42:07.000Z","updated_at":"2025-02-26T13:17:05.000Z","dependencies_parsed_at":"2024-06-20T23:41:36.382Z","dependency_job_id":"be69d05e-dac0-4a27-8d3e-cc266399571b","html_url":"https://github.com/BlueBrain/BlueNaaS-SingleCell","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BlueBrain%2FBlueNaaS-SingleCell","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BlueBrain%2FBlueNaaS-SingleCell/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BlueBrain%2FBlueNaaS-SingleCell/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BlueBrain%2FBlueNaaS-SingleCell/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BlueBrain","download_url":"https://codeload.github.com/BlueBrain/BlueNaaS-SingleCell/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":254076977,"owners_count":22010630,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["emodel","experiment","neuron"],"created_at":"2024-11-19T01:26:10.889Z","updated_at":"2025-05-14T05:31:48.224Z","avatar_url":"https://github.com/BlueBrain.png","language":"JavaScript","funding_links":[],"categories":[],"sub_categories":[],"readme":"\u003e [!WARNING]\n\u003e The Blue Brain Project concluded in December 2024, so development has ceased under the BlueBrain GitHub organization.\n\u003e Future development will take place at: https://github.com/openbraininstitute/BlueNaaS-SingleCell\n\n# BlueNaaS-SingleCell\n\n\u003cimg src=\"BlueNaaS-SingleCell.jpg\" width=\"800\"/\u003e\n\nBlue-Neuroscience-as-a-Service-SingleCell is an open source web application.\nIt enables users to quickly visualize single cell model morphologies in 3D\nor as a dendrogram. Using a simple web user interface, single cell simulations\ncan be easily configured and launched, producing voltage traces from selected\ncompartments.\n\n## Examples\nYou can use the application on the EBRAINS platform at https://ebrains-cls-interactive.github.io/online-use-cases.html by selecting \"Single Cell InSilico Experiments\". You can also follow this [direct link](https://blue-naas-bsp-epfl.apps.hbp.eu/#/url/hippocampus_optimization/rat/CA1/v4.0.5/optimizations_Python3/CA1_pyr_cACpyr_mpg141208_B_idA_20190328144006/CA1_pyr_cACpyr_mpg141208_B_idA_20190328144006.zip?use_cell=cell_seed3_0.hoc\u0026bluenaas=true).\n\n\u003cimg src=\"images/output.png\" width=\"800\"/\u003e\n\n## Documentation\nThe user documentation for the service can be found [here](https://ebrains-cls-interactive.github.io/docs/online_usecases/single_cell_in_silico/single_cell_clamp/single_cell_clamp.html).\n\n## Build frontend/backend dev images\n```bash\nmake build\n```\n\n## Run dev frontend/backend\n```bash\nmake run_dev_frontend \u0026\nmake run_dev_backend \u0026\n```\n\n## Citation\nWhen you use the BlueNaaS-SingleCell software, we ask you to cite the following:\n[![DOI](https://zenodo.org/badge/doi/10.5281/zenodo.7784792.svg)](https://doi.org/10.5281/zenodo.7784792)\n## Funding \u0026 Acknowledgment\n\nThe development of this software was supported by funding to the Blue Brain Project,\na research center of the École polytechnique fédérale de Lausanne (EPFL),\nfrom the Swiss government's ETH Board of the Swiss Federal Institutes of Technology\nand from the Human Brain Project's Specific Grant Agreement 3.\n\nCopyright (c) 2022-2024 Blue Brain Project/EPFL\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbluebrain%2Fbluenaas-singlecell","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbluebrain%2Fbluenaas-singlecell","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbluebrain%2Fbluenaas-singlecell/lists"}