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Ford, Ph.D.\u003c/h3\u003e\n\n## Pipeline\n\u003cimg src=\"https://raw.githubusercontent.com/BlueGranite/azure-synapse-vcf-analysis/main/img/pipeline.png\"\u003e\n\n## Sample Code\n1. Convert VCF files to Parquet: [ConvertVCFsToParquet.md](ConvertVCFsToParquet.md)\n2. Create External Table to VCF-based Parquet Files in Azure Synapse: [CreateVCFTable.md](CreateVCFTable.md)\n3. Sample SQL Queries: [SampleQueries.md](SampleQueries.md)\n\n\n\u003cimg src=\"https://raw.githubusercontent.com/BlueGranite/azure-synapse-vcf-analysis/main/img/synapse.png\"\u003e\n\n## Sample Data\nThe sample VCF data used in this demo is from the Phase 3 release of the [1000 Genomes Project](https://www.internationalgenome.org/data/).\nThis includes ~168GB of data in VCFs, which can be downloaded from their [FTP site](ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/).\n\n## BlueGranite Resources\n- This repository accompanies the BlueGranite blog post: https://www.bluegranite.com/blog/query-millions-of-genomic-variants-in-minutes-with-azure-synapse\n- Demo video on YouTube: [https://www.youtube.com/watch?v=4B-8cviFPYU](https://www.youtube.com/watch?v=4B-8cviFPYU)\n- _Building a Genomics Data Lake in Azure_ eBook: https://www.bluegranite.com/genomics-data-lake-ebook\n- BlueGranite Genomics Page: https://www.bluegranite.com/genomics\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbluegranite%2Fazure-synapse-vcf-analysis","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbluegranite%2Fazure-synapse-vcf-analysis","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbluegranite%2Fazure-synapse-vcf-analysis/lists"}