{"id":19106746,"url":"https://github.com/bodenmillergroup/bbsnippets","last_synced_at":"2026-03-19T08:06:58.247Z","repository":{"id":45653372,"uuid":"179965234","full_name":"BodenmillerGroup/bbsnippets","owner":"BodenmillerGroup","description":"This repository contains general examples, code snippets and guidelines.","archived":false,"fork":false,"pushed_at":"2022-01-12T17:23:08.000Z","size":59867,"stargazers_count":0,"open_issues_count":5,"forks_count":1,"subscribers_count":14,"default_branch":"master","last_synced_at":"2025-09-09T18:08:08.458Z","etag":null,"topics":["cytometry","imc","smc"],"latest_commit_sha":null,"homepage":"https://bodenmillergroup.github.io/bbsnippets","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BodenmillerGroup.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2019-04-07T12:46:15.000Z","updated_at":"2021-11-09T11:21:50.000Z","dependencies_parsed_at":"2022-09-14T12:01:24.039Z","dependency_job_id":null,"html_url":"https://github.com/BodenmillerGroup/bbsnippets","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/BodenmillerGroup/bbsnippets","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BodenmillerGroup%2Fbbsnippets","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BodenmillerGroup%2Fbbsnippets/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BodenmillerGroup%2Fbbsnippets/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BodenmillerGroup%2Fbbsnippets/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BodenmillerGroup","download_url":"https://codeload.github.com/BodenmillerGroup/bbsnippets/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BodenmillerGroup%2Fbbsnippets/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29946463,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-28T17:57:52.716Z","status":"ssl_error","status_checked_at":"2026-02-28T17:57:31.974Z","response_time":90,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cytometry","imc","smc"],"created_at":"2024-11-09T04:09:22.346Z","updated_at":"2026-02-28T18:01:34.552Z","avatar_url":"https://github.com/BodenmillerGroup.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Build Status](https://travis-ci.org/BodenmillerGroup/bbsnippets.svg?branch=master)](https://travis-ci.org/BodenmillerGroup/bbsnippets)\n\n## Getting started\n\nWe are using Docsify [https://docsify.js.org] documentation site generator. We strongly recommend to put a `README.md`\nfile into the snippet's folder, as it'll be used during automatic documentation indexing. The first line in this file\nis a title shown on a sidebar. Here is an example: [README.md](https://raw.githubusercontent.com/BodenmillerGroup/bbsnippets/master/snippets/imc/slide_overview/README.md)\n\nAll snippets are separated by domain-specific folders. Each such folder can contain multiple subfolders for different\ntasks/topics. It is recommended to split examples in different languages (R, Python, etc.) into a separate directory,\nso programming tools can manage these snippets accordingly.\n\n## Inline source code\n\nWith docsify 4.6 it is now possible to embed any type of file. You can embed these files as video, audio, iframes,\nor code blocks, and even Markdown files can even be embedded directly into the document.\n\nFor example, here embedded a Markdown file. You only need to do this:\n\n```markdown\n[filename](path/to/example.md ':include')\n```\n\nNormally, this will compiled into a link, but in docsify, if you add `:include` it will be embedded.\n\n#### Embedded file type\n\nCurrently, file extension are automatically recognized and embedded in different ways.\n\nThis is a supported embedding type:\n\n* **iframe** `.html`, `.htm`\n* **markdown** `.markdown`, `.md`\n* **audio** `.mp3`\n* **video** `.mp4`, `.ogg`\n* **code** other file extension\n\nOf course, you can force the specified. For example, you want to Markdown file as code block embedded.\n\n```markdown\n[filename](path/to/example.md ':include :type=code')\n```\n\n##### Embedded code fragments\nSometimes you don't want to embed a whole file. Maybe because you need just a few lines but you want to compile and test\nthe file in CI.\n\n```markdown\n[filename](path/to/example.js ':include :type=code :fragment=demo')\n```\n\nIn your code file you need to surround the fragment between `/// [demo]` lines (before and after the fragment).  \nAlternatively you can use `### [demo]`.\n\n\n##### Tag attribute\n\nIf you embed the file as `iframe`, `audio` and `video`, then you may need to set the attributes of these tags.\nYou can check [MDN](https://developer.mozilla.org/en-US/docs/Web/HTML/Element/iframe) for these attributes.\n\n```markdown\n[cinwell website](https://cinwell.com ':include :type=iframe width=100% height=400px')\n```\n\n##### The code block highlight\n\nEmbedding any type of source code file, you can specify the highlighted language or automatically identify.\n\n```markdown\n[](path/to/example.html ':include :type=code text')\n```\n\n\n## Code conventions\n\nWe suggest authors of submitted examples to follow commonly accepted source code styling practices. There are\n.editorconfig and .prettierrc config files in the root folder that can be used to apply such rules. For code formatting\nthese tools provide a strongly opinionated styling rules with good editor integration:\n\n- Python: Black (https://black.readthedocs.io)\n- R: styler (https://styler.r-lib.org/)\n- Other languages: Prettier (https://prettier.io/)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbodenmillergroup%2Fbbsnippets","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbodenmillergroup%2Fbbsnippets","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbodenmillergroup%2Fbbsnippets/lists"}