{"id":21280612,"url":"https://github.com/borgwardtlab/spinoptmmd","last_synced_at":"2026-01-01T22:05:13.196Z","repository":{"id":195596359,"uuid":"692837046","full_name":"BorgwardtLab/spinoptmmd","owner":"BorgwardtLab","description":"This is the official repository for our paper","archived":false,"fork":false,"pushed_at":"2023-09-29T14:24:50.000Z","size":130,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-01-22T04:14:00.947Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BorgwardtLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-09-17T18:23:04.000Z","updated_at":"2023-09-18T15:49:26.000Z","dependencies_parsed_at":"2024-11-21T13:02:49.596Z","dependency_job_id":null,"html_url":"https://github.com/BorgwardtLab/spinoptmmd","commit_stats":null,"previous_names":["borgwardtlab/spinoptmmd"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorgwardtLab%2Fspinoptmmd","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorgwardtLab%2Fspinoptmmd/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorgwardtLab%2Fspinoptmmd/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorgwardtLab%2Fspinoptmmd/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BorgwardtLab","download_url":"https://codeload.github.com/BorgwardtLab/spinoptmmd/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":243738987,"owners_count":20340002,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-21T10:37:20.073Z","updated_at":"2026-01-01T22:05:08.177Z","avatar_url":"https://github.com/BorgwardtLab.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# SpInOpt-MMD\n\nThis folder contains all the code to reproduce the experiments from our submission.\n\n### Copyright\n\n- The code in the ```jitkrittum``` folder is the original source code from [Jitkrittum et al.](https://github.com/wittawatj/interpretable-test).\n- The code in the ```src``` folder is closely modeled on Jitkrittum et al., but it has been refactored and extended for SpInOpt-MMD.\n- The experiments in the ```experiments``` folder are closely modeled on the experimental setting of Jitkrittum et al. for best comparability.\n\nTherefore, we include the original license and copyright statement in the ```jitkrittum``` folder (```LICENSE_interpretable-test.txt```).  \nPlease note that this copyright applies to all parts on the code which are taken from Jitkrittum et al.\n\n### Data\nAll data used in this analysis was obtained from public repositories (that may require registration for their access). \nThese include: \n\nBenchmark data sets: \n- [Karolinska faces data](https://kdef.se/)\n- [NIPS Paper dataset](https://www.kaggle.com/datasets/benhamner/nips-papers) \n\nBiological data sets\n- ADNI data: MR images obtained from [https://adni.loni.usc.edu/](https://adni.loni.usc.edu/) - check [this publication](https://proceedings.mlr.press/v149/bruningk21a.html) for details regarding patient selection and data preprocessing \n- PBMC data: data were obtained from [10X Genomics](https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/pbmc3k) - check [this publication](https://doi.org/10.1038/nbt.3192) for details regarding data preprocessing.\n- DRIAMS data: data were obtained from [the Dryad repository](https://datadryad.org/stash/dataset/doi:10.5061/dryad.bzkh1899q) - check [this publication](https://doi.org/10.1038/s41591-021-01619-9) for details regarding data preprocessing for the two selected examples\n- TCGA LGG whole genome sequencing data (ATRX mutation status) were obtained from [https://portal.gdc.cancer.gov/](https://portal.gdc.cancer.gov/)\n- TCGA-LGG MR images were obtained from [The Cancer Imaging Archive](https://wiki.cancerimagingarchive.net/pages/viewpage.action?pageId=5309188)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fborgwardtlab%2Fspinoptmmd","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fborgwardtlab%2Fspinoptmmd","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fborgwardtlab%2Fspinoptmmd/lists"}