{"id":21699524,"url":"https://github.com/brainets/hoi","last_synced_at":"2025-07-18T10:31:38.529Z","repository":{"id":99034851,"uuid":"596947798","full_name":"brainets/hoi","owner":"brainets","description":"Higher-Order Interactions","archived":false,"fork":false,"pushed_at":"2024-12-09T13:13:51.000Z","size":36760,"stargazers_count":36,"open_issues_count":5,"forks_count":12,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-06-27T01:40:40.078Z","etag":null,"topics":["higher-order-interactions","hoi","jax","network","python"],"latest_commit_sha":null,"homepage":"https://brainets.github.io/hoi/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/brainets.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-02-03T09:32:16.000Z","updated_at":"2025-04-02T13:23:06.000Z","dependencies_parsed_at":"2023-06-28T12:00:48.759Z","dependency_job_id":"a65c41ea-c272-4f80-9a8f-1e08823cbb11","html_url":"https://github.com/brainets/hoi","commit_stats":null,"previous_names":[],"tags_count":6,"template":false,"template_full_name":null,"purl":"pkg:github/brainets/hoi","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainets%2Fhoi","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainets%2Fhoi/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainets%2Fhoi/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainets%2Fhoi/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/brainets","download_url":"https://codeload.github.com/brainets/hoi/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainets%2Fhoi/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":264179690,"owners_count":23569203,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["higher-order-interactions","hoi","jax","network","python"],"created_at":"2024-11-25T20:02:11.230Z","updated_at":"2025-07-18T10:31:38.127Z","avatar_url":"https://github.com/brainets.png","language":"Python","funding_links":[],"categories":["Python"],"sub_categories":[],"readme":".. -*- mode: rst -*-\n\n|Black|_ |Codecov|_ |JOSS|_\n\n.. |Black| image:: https://img.shields.io/badge/code%20style-black-000000.svg\n.. _Black: https://github.com/psf/black\n\n.. |Codecov| image:: https://codecov.io/gh/brainets/hoi/graph/badge.svg?token=7PNM2VD994\n.. _Codecov: https://codecov.io/gh/brainets/hoi\n\n.. |JOSS| image:: https://joss.theoj.org/papers/10.21105/joss.07360/status.svg\n.. _JOSS: https://doi.org/10.21105/joss.07360\n\n\n.. image:: https://github.com/brainets/hoi/blob/main/docs/_static/hoi-logo.png\n  :target: https://brainets.github.io/hoi/\n\nDescription\n===========\n\nHOI (Higher Order Interactions) is a Python package to go beyond pairwise interactions by quantifying the statistical dependencies between 2 or more units using information-theoretical metrics. The package is built on top of `Jax \u003chttps://github.com/google/jax\u003e`_ allowing computations on CPU or GPU.\n\nInstallation\n============\n\nDependencies\n++++++++++++\n\nHOI requires :\n\n- Python (\u003e= 3.8)\n- numpy(\u003e=1.22)\n- scipy (\u003e=1.9)\n- jax\n- pandas\n- scikit-learn\n- jax-tqdm\n- tqdm\n\nUser installation\n+++++++++++++++++\n\nTo install Jax on GPU or CPU-only, please refer to Jax's documentation : https://jax.readthedocs.io/en/latest/installation.html\n\nIf you already have a working installation of NumPy, SciPy and Jax,\nthe easiest way to install hoi is using ``pip``:\n\n.. code-block:: shell\n\n    pip install -U hoi\n\nYou can also install the latest version of the software directly from Github :\n\n.. code-block:: shell\n\n    pip install git+https://github.com/brainets/hoi.git\n\n\nFor developers\n++++++++++++++\n\nFor developers, you can install it in develop mode with the following commands :\n\n.. code-block:: shell\n\n    git clone https://github.com/brainets/hoi.git\n    cd hoi\n    pip install -e .['full']\n\nThe full installation of HOI includes additional packages to test the software and build the documentation :\n\n- pytest\n- pytest-cov\n- codecov\n- xarray\n- sphinx!=4.1.0\n- sphinx-gallery\n- pydata-sphinx-theme\n- sphinxcontrib-bibtex\n- numpydoc\n- matplotlib\n- flake8\n- pep8-naming\n- black\n\n\nHelp and Support\n================\n\nDocumentation\n+++++++++++++\n\n- Link to the documentation: https://brainets.github.io/hoi/\n- Overview of the mathematical background : https://brainets.github.io/hoi/theory.html\n- List of implemented HOI metrics : https://brainets.github.io/hoi/api/modules.html\n- Examples : https://brainets.github.io/hoi/auto_examples/index.html\n\nCommunication\n+++++++++++++\n\nFor questions, please use the following link : https://github.com/brainets/hoi/discussions\n\nAcknowledgments\n===============\n\nHOI was mainly developed during the Google Summer of Code 2023 (https://summerofcode.withgoogle.com/archive/2023/projects/z6hGpvLS)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbrainets%2Fhoi","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbrainets%2Fhoi","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbrainets%2Fhoi/lists"}