{"id":30898282,"url":"https://github.com/bridgedb/bridgedb.github.io","last_synced_at":"2026-01-20T16:34:55.000Z","repository":{"id":40509192,"uuid":"240070630","full_name":"bridgedb/bridgedb.github.io","owner":"bridgedb","description":"Website of the BridgeDb 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Standardised access to Identifier Mappings\n\n\u003cscript type=\"application/ld+json\"\u003e\n{\n  \"@context\": \"http://schema.org\",\n  \"@type\": \"SoftwareApplication\",\n  \"http://purl.org/dc/terms/conformsTo\": { \"@type\": \"CreativeWork\", \"@id\": \"https://bioschemas.org/profiles/ComputationalTool/1.0-RELEASE/\" },\n  \"name\": \"BridgeDb\",\n  \"@id\": \"https://bridgedb.org/\",\n  \"url\": \"https://bridgedb.org/\",\n  \"description\": \"Identifier Mapping Services for Genes, Proteins, Metabolites, Interactions, Diseases, Complexes, Publications, and more!\",\n  \"citation\": \"https://doi.org/10.1186/1471-2105-11-5\",\n  \"license\": \"https://spdx.org/licenses/Apache-2.0\",\n  \"applicationCategory\": \"Computational science tool\",\n  \"operatingSystem\": [\"Linux\", \"Windows\", \"Mac\"]\n}\n\u003c/script\u003e\n\nBridgeDb is a framework to map identifiers between various biological databases and related resources. \nThese mappings are provided for genes, proteins, metabolites, metabolic reactions, diseases, complexes and publications. \nBridgeDb includes a Java library that provides an API for programmatic access.\n\nNEWS: Find the demo of the BridgeDb Shiny app [here](https://shiny.bridgedb.org) to map outdated identifiers!\n\n\u003ctable border=\"0\"\u003e\n  \u003ctr border=\"0\"\u003e\n    \u003ctd border=\"0\" width=\"33%\" align=\"center\"\u003e\u003ca href=\"/pages/framework.html\"\u003e\u003cimg width=\"80%\" src=\"/images/snowflake-with-hexagon-shape-outline_318-40429-300x300.jpg\" /\u003e\u003cbr /\u003eFramework and libraries\u003c/a\u003e\u003c/td\u003e\n    \u003ctd border=\"0\" width=\"33%\" align=\"center\"\u003e\u003ca href=\"/data/gene_database/\"\u003e\u003cimg width=\"80%\" src=\"/images/Database.png\" /\u003e\u003cbr /\u003eIdentifier Mapping Databases\u003c/a\u003e\u003c/td\u003e\n    \u003ctd border=\"0\" width=\"33%\" align=\"center\"\u003e\u003ca href=\"/pages/tutorials_workflows.html\"\u003e\u003cimg width=\"80%\" src=\"/images/puzzle-pieces-in-black-and-white-variant_318-50145-300x300.jpg\" /\u003e\u003cbr /\u003eTutorials and Workflows\u003c/a\u003e\u003c/td\u003e\n  \u003c/tr\u003e\n  \u003ctr border=\"0\"\u003e\n    \u003ctd border=\"0\" width=\"33%\" align=\"center\"\u003e\u003ca href=\"/pages/webservice.html\"\u003e\u003cimg width=\"80%\" src=\"/images/APIlogo_altered.jpg\" /\u003e\u003cbr /\u003eWebservice and API\u003c/a\u003e\u003c/td\u003e\n    \u003ctd border=\"0\" width=\"33%\" align=\"center\"\u003e\u003ca href=\"/pages/webservice-impl.html\"\u003e\u003cimg width=\"80%\" src=\"/images/docker-300x273.png\" /\u003e\u003cbr /\u003eWebservice implementation\u003cbr /\u003eDocker and semantic web\u003c/a\u003e\u003c/td\u003e\n    \u003ctd border=\"0\" width=\"33%\" align=\"center\"\u003e\u003ca href=\"/pages/docs.html\"\u003e\u003cimg width=\"80%\" src=\"/images/graduation-cap-outline_318-59572-300x300.jpg\" /\u003e\u003cbr /\u003eDocumentation\u003c/a\u003e\u003c/td\u003e\n  \u003c/tr\u003e\n  \u003ctr border=\"0\"\u003e\n    \u003ctd border=\"0\" width=\"33%\" align=\"center\"\u003e\u003ca href=\"/pages/development.html\"\u003e\u003cimg width=\"80%\" src=\"/images/handjes.png\" /\u003e\u003cbr /\u003eCollaborators\u003c/a\u003e\u003c/td\u003e\n    \u003ctd border=\"0\" width=\"33%\" align=\"center\"\u003e\u003ca href=\"https://groups.google.com/forum/#!forum/bridgedb-discuss\"\u003e\u003cimg width=\"80%\" src=\"/images/mail.png\" /\u003e\u003cbr /\u003eContact us\u003c/a\u003e\u003c/td\u003e\n    \u003ctd border=\"0\" width=\"33%\" align=\"center\"\u003e\u003ca href=\"/pages/citing.html\"\u003e\u003cimg width=\"80%\" src=\"/images/stack-of-paper-outline_318-46204_article_size.jpg\" /\u003e\u003cbr /\u003eHow to cite\u003c/a\u003e\u003c/td\u003e\n  \u003c/tr\u003e\n\u003c/table\u003e\n\n## Contributing organisations\n\n\u003ctable border=\"0\"\u003e\n  \u003ctr border=\"0\"\u003e\n    \u003ctd border=\"0\" width=\"200\"\u003e\u003cimg src=\"/images/university-1.png\" /\u003e\u003c/td\u003e\n    \u003ctd border=\"0\" width=\"200\"\u003e\u003cimg src=\"/images/hwlogo.gif\" /\u003e\u003c/td\u003e\n    \u003ctd border=\"0\" width=\"200\"\u003e\u003cimg src=\"/images/NRNB_black_500.png\" /\u003e\u003c/td\u003e\n    \u003ctd border=\"0\" width=\"200\"\u003e\u003cimg src=\"/images/Gladstone_Logotype-tagline.png\" /\u003e\u003c/td\u003e\n    \u003ctd border=\"0\" width=\"200\"\u003e\u003cimg src=\"/images/d2d.png\" /\u003e\u003c/td\u003e\n    \u003ctd border=\"0\" width=\"200\"\u003e\u003cimg src=\"/images/1920px-Maastricht_University_logo_2017_new_version.svg_-300x95.png\" /\u003e\u003c/td\u003e\n  \u003c/tr\u003e\n\u003c/table\u003e\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbridgedb%2Fbridgedb.github.io","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbridgedb%2Fbridgedb.github.io","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbridgedb%2Fbridgedb.github.io/lists"}