{"id":30898286,"url":"https://github.com/bridgedb/datasources","last_synced_at":"2025-09-09T01:44:54.215Z","repository":{"id":39708345,"uuid":"361110347","full_name":"bridgedb/datasources","owner":"bridgedb","description":"Repository with the BridgeDb data source.","archived":false,"fork":false,"pushed_at":"2025-07-28T17:23:30.000Z","size":176,"stargazers_count":4,"open_issues_count":3,"forks_count":7,"subscribers_count":7,"default_branch":"main","last_synced_at":"2025-07-28T18:43:53.604Z","etag":null,"topics":["bridgedb","life-sciences","registry"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"cc0-1.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bridgedb.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-04-24T08:30:02.000Z","updated_at":"2025-07-28T17:23:34.000Z","dependencies_parsed_at":"2024-07-25T06:49:23.803Z","dependency_job_id":"d40dee4c-3464-4800-8bc6-2bb5347c868e","html_url":"https://github.com/bridgedb/datasources","commit_stats":null,"previous_names":[],"tags_count":11,"template":false,"template_full_name":null,"purl":"pkg:github/bridgedb/datasources","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bridgedb%2Fdatasources","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bridgedb%2Fdatasources/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bridgedb%2Fdatasources/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bridgedb%2Fdatasources/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bridgedb","download_url":"https://codeload.github.com/bridgedb/datasources/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bridgedb%2Fdatasources/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274232006,"owners_count":25245856,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bridgedb","life-sciences","registry"],"created_at":"2025-09-09T01:44:53.232Z","updated_at":"2025-09-09T01:44:54.165Z","avatar_url":"https://github.com/bridgedb.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![DOI](https://zenodo.org/badge/361110347.svg)](https://zenodo.org/badge/latestdoi/361110347)\n\n# datasources\n\nRepository with the BridgeDb data source. The reason to abstract this out is that other tools no longer depend\non updates of the [BridgeDb Java](https://github.com/bridgedb/BridgeDb) library to use the information.\n\nThe following URLs can be used in downstream tools:\n\n* [https://bridgedb.github.io/datasources/datasources.tsv](https://bridgedb.github.io/datasources/datasources.tsv)\n* [https://bridgedb.github.io/datasources/datasources_headers.tsv](https://bridgedb.github.io/datasources/datasources_headers.tsv)\n* [https://bridgedb.github.io/datasources/organisms.tsv](https://bridgedb.github.io/datasources/organisms.tsv)\n\nIt includes interoperability layers with [identifiers.org](https://identifiers.org/) and [Bioregistry.io](https://bioregistry.io/).\n\n## Testing\n\nThere are tests for data integrity that can be run with the following commands\nin the shell:\n\n```bash\n$ pip install tox\n$ tox\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbridgedb%2Fdatasources","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbridgedb%2Fdatasources","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbridgedb%2Fdatasources/lists"}