{"id":20984399,"url":"https://github.com/bruvduroiu/rnn-protein-structure","last_synced_at":"2026-05-18T02:35:10.956Z","repository":{"id":79095935,"uuid":"133184988","full_name":"bruvduroiu/rnn-protein-structure","owner":"bruvduroiu","description":"Using Recurrent Neural Networks to predict secondary protein structure","archived":false,"fork":false,"pushed_at":"2018-05-14T17:23:09.000Z","size":35,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-07-30T15:30:33.714Z","etag":null,"topics":["cnn","gru","protein-structure","python","rnn","tensorflow"],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bruvduroiu.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-05-12T21:33:34.000Z","updated_at":"2018-05-14T17:23:10.000Z","dependencies_parsed_at":"2023-07-03T13:31:14.316Z","dependency_job_id":null,"html_url":"https://github.com/bruvduroiu/rnn-protein-structure","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/bruvduroiu/rnn-protein-structure","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bruvduroiu%2Frnn-protein-structure","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bruvduroiu%2Frnn-protein-structure/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bruvduroiu%2Frnn-protein-structure/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bruvduroiu%2Frnn-protein-structure/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bruvduroiu","download_url":"https://codeload.github.com/bruvduroiu/rnn-protein-structure/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bruvduroiu%2Frnn-protein-structure/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":33162675,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-17T22:39:12.733Z","status":"online","status_checked_at":"2026-05-18T02:00:06.436Z","response_time":71,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cnn","gru","protein-structure","python","rnn","tensorflow"],"created_at":"2024-11-19T05:53:25.252Z","updated_at":"2026-05-18T02:35:10.940Z","avatar_url":"https://github.com/bruvduroiu.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Predicting Protein Secondary Structure using RNN \u0026 CNN\n\nModel tested on the [CB513 dataset](https://www.princeton.edu/~jzthree/datasets/ICML2014/).\n\nNote: This code is optimised to run on Tensorflow version 1.3.0.\n\n## Motivation\n\nTo build a RNN-based neural network model capable of predicting the secondary structure of proteins based on their amino-acid chains.\n\n## Model architecture\n\nTODO\n\n## Results\n\nTODO\n\nThis repository represents the author's submission for COMP3212: Computational Biology course at the [University of Southampton](https://www.ecs.soton.ac.uk)","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbruvduroiu%2Frnn-protein-structure","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbruvduroiu%2Frnn-protein-structure","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbruvduroiu%2Frnn-protein-structure/lists"}