{"id":35230766,"url":"https://github.com/bruvellu/3d-tutorial","last_synced_at":"2026-01-13T21:41:33.788Z","repository":{"id":330873123,"uuid":"1122404826","full_name":"bruvellu/3d-tutorial","owner":"bruvellu","description":"Tutorial on how to visualize 3D data in Fiji using built-in tools and 3Dscript","archived":false,"fork":false,"pushed_at":"2025-12-30T16:33:06.000Z","size":104973,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2026-01-07T19:52:11.291Z","etag":null,"topics":["3d","3d-visualization","3dscript","fiji","imagej","tutorial"],"latest_commit_sha":null,"homepage":"https://bruvellu.github.io/3d-tutorial/","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"cc-by-4.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bruvellu.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":".zenodo.json","notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2025-12-24T16:49:55.000Z","updated_at":"2025-12-30T11:18:32.000Z","dependencies_parsed_at":null,"dependency_job_id":null,"html_url":"https://github.com/bruvellu/3d-tutorial","commit_stats":null,"previous_names":["bruvellu/3d-tutorial"],"tags_count":5,"template":false,"template_full_name":null,"purl":"pkg:github/bruvellu/3d-tutorial","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bruvellu%2F3d-tutorial","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bruvellu%2F3d-tutorial/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bruvellu%2F3d-tutorial/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bruvellu%2F3d-tutorial/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bruvellu","download_url":"https://codeload.github.com/bruvellu/3d-tutorial/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bruvellu%2F3d-tutorial/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28401058,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-13T14:36:09.778Z","status":"ssl_error","status_checked_at":"2026-01-13T14:35:19.697Z","response_time":56,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["3d","3d-visualization","3dscript","fiji","imagej","tutorial"],"created_at":"2025-12-30T02:27:17.458Z","updated_at":"2026-01-13T21:41:33.783Z","avatar_url":"https://github.com/bruvellu.png","language":"HTML","readme":"# 🧊 Visualization of 3D data in Fiji using built-in tools and 3Dscript\n\nThis tutorial shows different approaches to visualize 3D microscopy data in [Fiji](https://fiji.sc). It provides a quick introduction to some of the bundled tools such as [Orthogonal Views](https://imagej.net/imaging/z-functions#orthogonal-views), [Volume Viewer](https://imagej.net/imaging/z-functions#volume-viewer), [3D Viewer](https://imagej.net/plugins/3d-viewer/), and [BigDataViewer](https://imagej.net/plugins/bdv/), and a more in-depth explanation of the plugin [3Dscript](https://bene51.github.io/3Dscript/).\n\n## Getting started\n\nThe tutorial is available online at [bruvellu.github.io/3d-tutorial](https://bruvellu.github.io/3d-tutorial/).\n\n### Offline usage\n\n- Download the latest archive from GitHub ([here](https://github.com/bruvellu/3d-tutorial/archive/refs/heads/main.zip)) or Zenodo ([here](https://doi.org/10.5281/zenodo.18070016))\n- Unzip the archive in your working directory\n- Open the file `3d-tutorial.html` on your browser\n\n## Citation\n\nVellutini, B. C. (2026). Visualization of 3D data in Fiji using built-in tools and 3Dscript. Zenodo. \u003chttps://doi.org/10.5281/zenodo.18070016\u003e\n\n## License\n\nThis tutorial is available under a [Creative Commons Attribution 4.0 International License](http://creativecommons.org/licenses/by/4.0/).\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbruvellu%2F3d-tutorial","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbruvellu%2F3d-tutorial","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbruvellu%2F3d-tutorial/lists"}