{"id":21181552,"url":"https://github.com/bryancastillo10/biobytes-pairsync","last_synced_at":"2026-07-01T01:32:17.228Z","repository":{"id":210603527,"uuid":"726840024","full_name":"bryancastillo10/BioBytes-PairSync","owner":"bryancastillo10","description":"A Bioinformatics Tool for Basic Information Retrieval and Pairwise Sequence Alignment","archived":false,"fork":false,"pushed_at":"2024-01-08T06:00:09.000Z","size":1589,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-10-29T03:35:36.319Z","etag":null,"topics":["bioinformatics","gui-application"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bryancastillo10.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"License.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-12-03T15:01:09.000Z","updated_at":"2024-05-25T06:27:26.000Z","dependencies_parsed_at":"2023-12-04T01:22:46.730Z","dependency_job_id":"41a5756b-27c3-4366-a069-51f32421d304","html_url":"https://github.com/bryancastillo10/BioBytes-PairSync","commit_stats":null,"previous_names":["bryancastillo10/pairwise_gui"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/bryancastillo10/BioBytes-PairSync","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bryancastillo10%2FBioBytes-PairSync","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bryancastillo10%2FBioBytes-PairSync/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bryancastillo10%2FBioBytes-PairSync/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bryancastillo10%2FBioBytes-PairSync/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bryancastillo10","download_url":"https://codeload.github.com/bryancastillo10/BioBytes-PairSync/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bryancastillo10%2FBioBytes-PairSync/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34989787,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-30T02:00:05.919Z","response_time":92,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","gui-application"],"created_at":"2024-11-20T17:51:15.001Z","updated_at":"2026-07-01T01:32:17.211Z","avatar_url":"https://github.com/bryancastillo10.png","language":"Python","funding_links":["https://paypal.me/BryanAngeloCastillo"],"categories":[],"sub_categories":[],"readme":"### BioBytes PairSync: A Bioinformatics Tool for Basic Information Retrieval and Pairwise Sequence Alignment\n\n[Download Installer! ](https://github.com/bryancastillo10/BioBytes-PairSync/releases)\n\nClick on \u003cmark style= \"background-color: rgba(0,128,128,0.5); color: #fff\"\u003e\"biobytes_pairsync_setup.exe\"\u003c/mark\u003e at the releases page.\n\n![Static Badge](https://img.shields.io/badge/BioBytes_PairSync-v1.0.1-%23009E73?style=plastic\u0026labelColor=%23363636%20)\n\n![Static Badge](https://img.shields.io/badge/Python-%233776AB?style=for-the-badge\u0026logo=python\u0026logoColor=%23F0E442\u0026labelColor=%230072B2\u0026color=%2356B4E9)\n![Static Badge](https://img.shields.io/badge/PyQt-%2341CD52?style=for-the-badge\u0026logo=Qt\u0026logoColor=%235EFB75\u0026labelColor=%23000000\u0026color=%23009E73)\n\n### Demo\n\n\u003cimg src=\"documentations/Tab1_BasicInfo.png\"\u003e\n\n\u003cimg src=\"documentations/Tab2_DotPlot.png\"\u003e\n\nThis GUI app allows users to input biological sequences, either manually or by loading from a file. It supports DNA, RNA, and Protein sequences. Users can retrieve various information about the input sequence, such as **nucleotide or amino acid frequency**, **GC content**, **reverse complement**, **transcription**, **translation**, **amino acid molecular weight**, **isoelectric point**, and **open reading frames**.\n\nUsers can save the output information to a text file and clear the output section for a clean slate. Additionally, loading sequences from \u003cmark style= \"background-color: rgba(0,128,128,0.5); color: #fff\"\u003eFASTA or text files\u003c/mark\u003e is supported, making it convenient for users to work with existing sequence data.\n\nEnjoy exploring the functionalities provided by this GUI app for basic sequence analysis!\n\n## Usage\n\n### Basic Information\n\n- Please select the **Biomolecule Type** of your data (_DNA, RNA, or Protein_).\n\n- Add a **Label** (Optional). It would add _\"No Sample Label Added\"_ if no entry added\n\n- Add the sequence **Input Box**. Make sure it is in correct format and without whitespaces. NCBI URL is also accepted under the Nucleotide Database.\n\n- You can **Clear** the output or **Save** it as _.txt file_\n\n### Dot Plot Alignment\n\n- Input your first and second sequence at **Sequence 1** and **Sequence 2** box respectively. Additionally, it is optional to add a **Label**\n\n- Take note that whitespaces and totally unequal lengths prompts error and not allowed for this alignment\n\n_It is highly recommended to add Label as it would appear in the plot_\n\n- The **Plot Button** allows to generate the Dot Plot with associated information of match \u0026 mismatch bases/amino acids.\n\n- The output can be saved by clicking the **Save Button** as _.png file_\n\n### Local and Global Alignment\n\n- Both Local and Global Alignment had the same _User Interface Layout_ but they differ in the algorithm used since they have different purpose.\n\n- Input your first and second sequence at **Sequence 1** and **Sequence 2** box respectively. Additionally, it is optional to add a **Label**\n\n- Make sure no whitespaces included on the sequence and they are compatible for pairwise alignment (**sequence length** may be _different_ but not applicable for pair of sequences which has _large difference in length_)\n\n- You can **Clear** the output or **Save** it as _.txt file_\n\nThank you for using my developed tool :ship:\n\n#### Donations\n\nDeveloper: _Bryan Castillo_\n\n[Paypal! ](https://paypal.me/BryanAngeloCastillo)\nIt would help me to build more...\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbryancastillo10%2Fbiobytes-pairsync","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbryancastillo10%2Fbiobytes-pairsync","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbryancastillo10%2Fbiobytes-pairsync/lists"}