{"id":24998429,"url":"https://github.com/cameronraysmith/perturbvelo","last_synced_at":"2025-08-17T08:06:52.579Z","repository":{"id":147109119,"uuid":"599407980","full_name":"cameronraysmith/perturbvelo","owner":"cameronraysmith","description":null,"archived":false,"fork":false,"pushed_at":"2024-05-21T13:40:20.000Z","size":40,"stargazers_count":1,"open_issues_count":2,"forks_count":3,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-04-22T17:54:33.463Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":false,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":"pinellolab/perturbvelo","license":"agpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cameronraysmith.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"docs/contributing.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-02-09T04:13:32.000Z","updated_at":"2023-09-26T08:42:54.000Z","dependencies_parsed_at":null,"dependency_job_id":"c3a245ef-197e-488b-b4c4-93dd18385b3f","html_url":"https://github.com/cameronraysmith/perturbvelo","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/cameronraysmith/perturbvelo","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cameronraysmith%2Fperturbvelo","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cameronraysmith%2Fperturbvelo/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cameronraysmith%2Fperturbvelo/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cameronraysmith%2Fperturbvelo/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cameronraysmith","download_url":"https://codeload.github.com/cameronraysmith/perturbvelo/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cameronraysmith%2Fperturbvelo/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270820793,"owners_count":24651534,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-17T02:00:09.016Z","response_time":129,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-02-04T17:58:09.337Z","updated_at":"2025-08-17T08:06:52.564Z","avatar_url":"https://github.com/cameronraysmith.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# perturbvelo\n\n[![Tests][badge-tests]][link-tests]\n[![Documentation][badge-docs]][link-docs]\n\n[badge-tests]: https://img.shields.io/github/actions/workflow/status/pinellolab/perturbvelo/test.yaml?branch=main\n[link-tests]: https://github.com/pinellolab/perturbvelo/actions/workflows/test.yml\n[badge-docs]: https://img.shields.io/readthedocs/perturbvelo\n\nProbabilistic model of RNA metabolism perturbation response\n\n## Getting started\n\nPlease refer to the [documentation][link-docs]. In particular, the\n\n-   [API documentation][link-api].\n\n## Installation\n\nYou need to have Python 3.8 or newer installed on your system. If you don't have\nPython installed, we recommend installing [Mambaforge](https://github.com/conda-forge/miniforge#mambaforge).\n\nThere are several alternative options to install perturbvelo:\n\n\u003c!--\n1) Install the latest release of `perturbvelo` from `PyPI \u003chttps://pypi.org/project/perturbvelo/\u003e`_:\n\n```bash\npip install perturbvelo\n```\n--\u003e\n\n1. Install the latest development version:\n\n```bash\npip install git+https://github.com/pinellolab/perturbvelo.git@main\n```\n\n## Release notes\n\nSee the [changelog][changelog].\n\n## Contact\n\nFor questions and help requests, you can reach out in the [scverse discourse][scverse-discourse].\nIf you found a bug, please use the [issue tracker][issue-tracker].\n\n## Citation\n\n\u003e t.b.a\n\n[scverse-discourse]: https://discourse.scverse.org/\n[issue-tracker]: https://github.com/pinellolab/perturbvelo/issues\n[changelog]: https://perturbvelo.readthedocs.io/latest/changelog.html\n[link-docs]: https://perturbvelo.readthedocs.io\n[link-api]: https://perturbvelo.readthedocs.io/latest/api.html\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcameronraysmith%2Fperturbvelo","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcameronraysmith%2Fperturbvelo","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcameronraysmith%2Fperturbvelo/lists"}