{"id":23673925,"url":"https://github.com/carpentries-incubator/open-science-with-r","last_synced_at":"2025-09-02T03:30:44.757Z","repository":{"id":48929963,"uuid":"224669158","full_name":"carpentries-incubator/open-science-with-r","owner":"carpentries-incubator","description":"Carpentry-style lesson on how to use R, RStudio together with git \u0026 Github to promote Open Science practices.","archived":false,"fork":false,"pushed_at":"2021-10-06T09:55:05.000Z","size":86625,"stargazers_count":7,"open_issues_count":12,"forks_count":12,"subscribers_count":6,"default_branch":"gh-pages","last_synced_at":"2025-04-03T07:01:46.073Z","etag":null,"topics":["alpha","carpentries","data-science","dplyr","ggplot2","git","github","lesson","open-science","r","rstudio","scripting","tidyr"],"latest_commit_sha":null,"homepage":"https://carpentries-incubator.github.io/open-science-with-r/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/carpentries-incubator.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION","codeowners":null,"security":null,"support":null}},"created_at":"2019-11-28T14:20:20.000Z","updated_at":"2025-03-22T08:13:54.000Z","dependencies_parsed_at":"2022-09-14T08:50:38.281Z","dependency_job_id":null,"html_url":"https://github.com/carpentries-incubator/open-science-with-r","commit_stats":null,"previous_names":[],"tags_count":18,"template":false,"template_full_name":null,"purl":"pkg:github/carpentries-incubator/open-science-with-r","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fopen-science-with-r","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fopen-science-with-r/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fopen-science-with-r/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fopen-science-with-r/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/carpentries-incubator","download_url":"https://codeload.github.com/carpentries-incubator/open-science-with-r/tar.gz/refs/heads/gh-pages","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fopen-science-with-r/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273224868,"owners_count":25067180,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-02T02:00:09.530Z","response_time":77,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["alpha","carpentries","data-science","dplyr","ggplot2","git","github","lesson","open-science","r","rstudio","scripting","tidyr"],"created_at":"2024-12-29T12:57:38.916Z","updated_at":"2025-09-02T03:30:39.742Z","avatar_url":"https://github.com/carpentries-incubator.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Open Science with R\n\n\u003c!-- ALL-CONTRIBUTORS-BADGE:START - Do not remove or modify this section --\u003e\n[![All Contributors](https://img.shields.io/badge/all_contributors-4-orange.svg?style=flat-square)](#contributors-)\n\u003c!-- ALL-CONTRIBUTORS-BADGE:END --\u003e\n\n[![Create a Slack Account with us](https://img.shields.io/badge/Create_Slack_Account-The_Carpentries-071159.svg)](https://swc-slack-invite.herokuapp.com/)\n\nThis repository generates the corresponding lesson website from [The Carpentries](https://carpentries.org/) repertoire of lessons. \n\nThis lesson teaches modern R scripting using the `tidyverse` collection of packages, version control and collaboration using `git` and GitHub. Altogether, this provides a foundation for a more Open Science by offering practical ways of analysing data and building workflows and figures in a transparent and efficient manner.   \n\n# Local preview of the website\n\nTo visualise the website before comming your changes and pushing them to GitHub, several options are available. \n\n## Ruby rbenv\n`rbenv` is a way to manage different Ruby version on your machine. The GitHub page is here: [https://github.com/rbenv/rbenv](https://github.com/rbenv/rbenv). \n\n1. Install `rbenv` by following the instructions. \n2. Install your Ruby version with `rbenv install 2.7.3`\n3. Install the required Gems (see the [Gemfile](./Gemfile) for the dependency list with `bundle install`\n4. Preview the website locally with `bundle exec jekyll serve`. This will read the `_config.yml` file by default. \n5. Preview the website locally at http://127.0.0.1:4000\n\n\n# Contributing and authors\n\nWe welcome all contributions to improve the lesson! Maintainers will do their best to help you if you have any questions, concerns, or experience any difficulties along the way.\n\nWe'd like to ask you to familiarize yourself with our [Contribution Guide](CONTRIBUTING.md) and have a look at\nthe [more detailed guidelines][lesson-example] on proper formatting, ways to render the lesson locally, and even\nhow to write new episodes.\n\nPlease see the current list of [issues][FIXME] for ideas for contributing to this\nrepository. For making your contribution, we use the GitHub flow, which is\nnicely explained in the chapter [Contributing to a Project](http://git-scm.com/book/en/v2/GitHub-Contributing-to-a-Project) in Pro Git\nby Scott Chacon.\nLook for the tag ![good_first_issue](https://img.shields.io/badge/-good%20first%20issue-gold.svg). This indicates that the mantainers will welcome a pull request fixing this issue.  \n\n## Maintainer(s)\n\nCurrent maintainers of this lesson are \n\n* Marc Galland @mgalland\n\n\n## Authors\n\nA list of contributors to the lesson can be found in [AUTHORS](AUTHORS)\n\n## Citation\n\nTo cite this lesson, please consult with [CITATION](CITATION)\n\n[lesson-example]: https://carpentries.github.io/lesson-example\n\n## Contributors ✨\n\nThanks goes to these wonderful people ([emoji key](https://allcontributors.org/docs/en/emoji-key)):\n\n\u003c!-- ALL-CONTRIBUTORS-LIST:START - Do not remove or modify this section --\u003e\n\u003c!-- prettier-ignore-start --\u003e\n\u003c!-- markdownlint-disable --\u003e\n\u003ctable\u003e\n  \u003ctr\u003e\n    \u003ctd align=\"center\"\u003e\u003ca href=\"https://github.com/stijnvanhoey\"\u003e\u003cimg src=\"https://avatars1.githubusercontent.com/u/754862?v=4?s=100\" width=\"100px;\" alt=\"\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eStijn Van Hoey\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/carpentries-incubator/open-science-with-r/pulls?q=is%3Apr+reviewed-by%3Astijnvanhoey\" title=\"Reviewed Pull Requests\"\u003e👀\u003c/a\u003e\u003c/td\u003e\n    \u003ctd align=\"center\"\u003e\u003ca href=\"https://github.com/rtherezan\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/60100308?v=4?s=100\" width=\"100px;\" alt=\"\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eRodrigo\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/carpentries-incubator/open-science-with-r/pulls?q=is%3Apr+reviewed-by%3Artherezan\" title=\"Reviewed Pull Requests\"\u003e👀\u003c/a\u003e\u003c/td\u003e\n    \u003ctd align=\"center\"\u003e\u003ca href=\"https://github.com/azancarini\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/22880040?v=4?s=100\" width=\"100px;\" alt=\"\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eAnouk Zancarini\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/carpentries-incubator/open-science-with-r/pulls?q=is%3Apr+reviewed-by%3Aazancarini\" title=\"Reviewed Pull Requests\"\u003e👀\u003c/a\u003e\u003c/td\u003e\n    \u003ctd align=\"center\"\u003e\u003ca href=\"https://github.com/tijsbliek\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/29064949?v=4?s=100\" width=\"100px;\" alt=\"\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003etijs bliek\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/carpentries-incubator/open-science-with-r/pulls?q=is%3Apr+reviewed-by%3Atijsbliek\" title=\"Reviewed Pull Requests\"\u003e👀\u003c/a\u003e \u003ca href=\"https://github.com/carpentries-incubator/open-science-with-r/commits?author=tijsbliek\" title=\"Tests\"\u003e⚠️\u003c/a\u003e\u003c/td\u003e\n  \u003c/tr\u003e\n\u003c/table\u003e\n\n\u003c!-- markdownlint-restore --\u003e\n\u003c!-- prettier-ignore-end --\u003e\n\n\u003c!-- ALL-CONTRIBUTORS-LIST:END --\u003e\n\nThis project follows the [all-contributors](https://github.com/all-contributors/all-contributors) specification. Contributions of any kind welcome!\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcarpentries-incubator%2Fopen-science-with-r","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcarpentries-incubator%2Fopen-science-with-r","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcarpentries-incubator%2Fopen-science-with-r/lists"}