{"id":20751294,"url":"https://github.com/cbg-ethz/geneaccord","last_synced_at":"2025-04-28T13:12:52.288Z","repository":{"id":145136836,"uuid":"124211156","full_name":"cbg-ethz/GeneAccord","owner":"cbg-ethz","description":"GeneAccord: An R package to detect patterns of mutual exclusivity and co-occurrence on the clone level in a cohort of cancer patients","archived":false,"fork":false,"pushed_at":"2021-09-10T09:56:46.000Z","size":3100,"stargazers_count":2,"open_issues_count":0,"forks_count":0,"subscribers_count":4,"default_branch":"master","last_synced_at":"2024-08-09T00:21:43.186Z","etag":null,"topics":["cancer","clonal","cooccurrence","exclusivity","mutual"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cbg-ethz.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2018-03-07T09:21:36.000Z","updated_at":"2022-09-14T19:38:51.000Z","dependencies_parsed_at":null,"dependency_job_id":"2385dc85-0d57-4610-a4ca-7f3946bd3fdf","html_url":"https://github.com/cbg-ethz/GeneAccord","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2FGeneAccord","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2FGeneAccord/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2FGeneAccord/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2FGeneAccord/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cbg-ethz","download_url":"https://codeload.github.com/cbg-ethz/GeneAccord/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":225017986,"owners_count":17407867,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cancer","clonal","cooccurrence","exclusivity","mutual"],"created_at":"2024-11-17T08:32:32.453Z","updated_at":"2024-11-17T08:32:33.115Z","avatar_url":"https://github.com/cbg-ethz.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# GeneAccord #\r\n\r\nThis R package has functions to detect clonal exclusivity or co-occurrence patterns of altered genes or pathways in a cohort of cancer patients. Such clonally exclusive gene pairs may uncover synergies between co-existing clones.\r\n\r\nThe file geneAccord_AML.R reads in the data from the AML cohort and runs the three different GeneAccord tests on the data.\r\n\r\n### Contacts ###\r\n\r\nJack Kuipers ( jack.kuipers __ bsse.ethz.ch )\r\n\r\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcbg-ethz%2Fgeneaccord","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcbg-ethz%2Fgeneaccord","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcbg-ethz%2Fgeneaccord/lists"}