{"id":34027977,"url":"https://github.com/cbica/nichart_viewer","last_synced_at":"2026-03-17T22:38:45.425Z","repository":{"id":241389385,"uuid":"640036969","full_name":"CBICA/NiChart_Viewer","owner":"CBICA","description":"Visualization tool for Neuroimaging Chart (NiChart) imaging descriptors and biomarkers","archived":false,"fork":false,"pushed_at":"2024-09-10T17:24:04.000Z","size":49786,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-12-15T07:25:30.147Z","etag":null,"topics":["nichart"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/CBICA.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2023-05-12T20:28:52.000Z","updated_at":"2024-07-25T19:23:36.000Z","dependencies_parsed_at":"2024-09-06T06:06:26.784Z","dependency_job_id":"272131f9-9ced-49ec-8f32-0680052bbf65","html_url":"https://github.com/CBICA/NiChart_Viewer","commit_stats":null,"previous_names":["gurayerus/nichart_viewer","cbica/nichart_viewer"],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/CBICA/NiChart_Viewer","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CBICA%2FNiChart_Viewer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CBICA%2FNiChart_Viewer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CBICA%2FNiChart_Viewer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CBICA%2FNiChart_Viewer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CBICA","download_url":"https://codeload.github.com/CBICA/NiChart_Viewer/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CBICA%2FNiChart_Viewer/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30633524,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-17T22:38:22.569Z","status":"ssl_error","status_checked_at":"2026-03-17T22:38:11.804Z","response_time":56,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["nichart"],"created_at":"2025-12-13T17:02:58.281Z","updated_at":"2026-03-17T22:38:45.418Z","avatar_url":"https://github.com/CBICA.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Neuroimaging Chart (NiChart) Viewer\n\n![NiChart Logo](./NiChart_Viewer/resources/nichart_viewer_logo_s1.png)\n\nNiChart viewer **[NiChart_Viewer]** is a toolbox for visualization of NiChart image descriptors and biomarkers. \n\n## Notes\n\nThe current version is primarily designed for visualizing NiChart_DLMUSE variables (regions of interest - ROIs) together with age centile curves of select ROIs derived from NiChart reference data.\n\n## Installation\n\nYou may directly install NiChart_Viewer as a package from PyPI, or build it from source. \n\n```bash\nconda create -n NiChart_Viewer python=3.8.8\nconda activate NiChart_Viewer\nconda install pip\npip install .\n```\n\nAlternatively:\n\n```bash\nconda create -n NiChart_Viewer python=3.8.8\nconda activate NiChart_Viewer\npip install NiChart_Viewer\n```\n\n## Usage\n\n```bash\nNiChart_Viewer --data_file infile1.csv --data_file infile2.csv ...\n```\n\n## Quickstart\n\n```bash\ncd examples/IXI_ROIs\n./run_nichart_viewer_IXI.sh\n```\n\nThe script launches the viewer using the public IXI dataset as an example (DLMUSE ROIs + demog. file with Age and Sex columns).\n\nAfter launching the viewer, users can view data tables and select ROIs, correct ROIs for intra-cranial volume (ICV), merge ROI values with demographic variables (Age and Sex), view data distributions and scatter plots of variable pairs, and plot selected variables against NiChart reference centile curves\n\n![Example visualization](./NiChart_Viewer/resources/nichart_viewer_ixi_example.png)\n\n\n## Disclaimer\n- The software has been designed for research purposes only and has neither been reviewed nor approved for clinical use by the Food and Drug Administration (FDA) or by any other federal/state agency.\n- By using NiChart_Viewer, the user agrees to the following license: https://www.med.upenn.edu/cbica/software-agreement-non-commercial.html\n\n## Contact\n\u003ca href=\"mailto:guray.erus@pennmedicine.upenn.edu\"\u003eGuray Erus\u003c/a\u003e.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcbica%2Fnichart_viewer","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcbica%2Fnichart_viewer","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcbica%2Fnichart_viewer/lists"}