{"id":18989979,"url":"https://github.com/cdcgov/flu-nursing-home-model","last_synced_at":"2025-04-13T00:44:59.956Z","repository":{"id":208258277,"uuid":"712438977","full_name":"CDCgov/flu-nursing-home-model","owner":"CDCgov","description":null,"archived":false,"fork":false,"pushed_at":"2025-02-18T09:07:34.000Z","size":57,"stargazers_count":1,"open_issues_count":3,"forks_count":5,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-04-13T00:44:55.548Z","etag":null,"topics":["cdc-influenza-division","ncird","ncird-id"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/CDCgov.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-10-31T13:27:30.000Z","updated_at":"2025-02-18T09:07:38.000Z","dependencies_parsed_at":"2025-01-01T14:34:49.304Z","dependency_job_id":null,"html_url":"https://github.com/CDCgov/flu-nursing-home-model","commit_stats":null,"previous_names":["cdcgov/flu-nursing-home-model"],"tags_count":0,"template":false,"template_full_name":"CDCgov/template","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDCgov%2Fflu-nursing-home-model","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDCgov%2Fflu-nursing-home-model/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDCgov%2Fflu-nursing-home-model/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDCgov%2Fflu-nursing-home-model/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CDCgov","download_url":"https://codeload.github.com/CDCgov/flu-nursing-home-model/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248650420,"owners_count":21139672,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cdc-influenza-division","ncird","ncird-id"],"created_at":"2024-11-08T17:08:33.497Z","updated_at":"2025-04-13T00:44:59.939Z","avatar_url":"https://github.com/CDCgov.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Overview\n\nThis repository contains code required to reproduce results from the following paper:\n\nSE Morris\\*, CM Zipfel\\*, K Peer, ZJ Madewell, S Brenner, S Garg, P Paul, RB Slayton, M Biggerstaff. Modeling the impacts of antiviral prophylaxis strategies in mitigating seasonal influenza outbreaks in nursing homes. *Clinical Infectious Diseases* 2023; DOI 10.1093/cid/ciad764.\n\n\\*Contributed equally\n\nThere are no original data associated with this work.\n\nThe findings and conclusions of this report are those of the authors and do not necessarily represent the official position of the Centers for Disease Control and Prevention.\n\n\n### Quick-start guide\n\nScripts to reproduce each figure are located in `rscripts/`. \n\nEquations and parameters for the baseline model are given in `rscripts/eqns.R` and `rscripts/parameters.R`, respectively.\n\n\n### Additional information\n\nQuestions can be directed to Sinead Morris (run7@cdc.gov) or Casey Zipfel (ruv5@cdc.gov).\n  \n## Public Domain Standard Notice\n\nThis repository constitutes a work of the United States Government and is not\nsubject to domestic copyright protection under 17 USC § 105. This repository is in\nthe public domain within the United States, and copyright and related rights in\nthe work worldwide are waived through the [CC0 1.0 Universal public domain dedication](https://creativecommons.org/publicdomain/zero/1.0/).\nAll contributions to this repository will be released under the CC0 dedication. By\nsubmitting a pull request you are agreeing to comply with this waiver of\ncopyright interest.\n\n## License Standard Notice\n\nThe repository utilizes code licensed under the terms of the Apache Software\nLicense and therefore is licensed under ASL v2 or later.\n\nThis source code in this repository is free: you can redistribute it and/or modify it under\nthe terms of the Apache Software License version 2, or (at your option) any\nlater version.\n\nThis source code in this repository is distributed in the hope that it will be useful, but WITHOUT ANY\nWARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A\nPARTICULAR PURPOSE. See the Apache Software License for more details.\n\nYou should have received a copy of the Apache Software License along with this\nprogram. If not, see http://www.apache.org/licenses/LICENSE-2.0.html\n\nThe source code forked from other open source projects will inherit its license.\n\n## Privacy Standard Notice\n\nThis repository contains only non-sensitive, publicly available data and\ninformation. All material and community participation is covered by the\n[Disclaimer](https://github.com/CDCgov/template/blob/master/DISCLAIMER.md)\nand [Code of Conduct](https://github.com/CDCgov/template/blob/master/code-of-conduct.md).\nFor more information about CDC's privacy policy, please visit [http://www.cdc.gov/other/privacy.html](https://www.cdc.gov/other/privacy.html).\n\n## Contributing Standard Notice\n\nAnyone is encouraged to contribute to the repository by [forking](https://help.github.com/articles/fork-a-repo)\nand submitting a pull request. (If you are new to GitHub, you might start with a\n[basic tutorial](https://help.github.com/articles/set-up-git).) By contributing\nto this project, you grant a world-wide, royalty-free, perpetual, irrevocable,\nnon-exclusive, transferable license to all users under the terms of the\n[Apache Software License v2](http://www.apache.org/licenses/LICENSE-2.0.html) or\nlater.\n\nAll comments, messages, pull requests, and other submissions received through\nCDC including this GitHub page may be subject to applicable federal law, including but not limited to the Federal Records Act, and may be archived. Learn more at [http://www.cdc.gov/other/privacy.html](http://www.cdc.gov/other/privacy.html).\n\n## Records Management Standard Notice\n\nThis repository is not a source of government records, but is a copy to increase\ncollaboration and collaborative potential. All government records will be\npublished through the [CDC web site](http://www.cdc.gov).\n\n## Additional Standard Notices\n\nPlease refer to [CDC's Template Repository](https://github.com/CDCgov/template)\nfor more information about [contributing to this repository](https://github.com/CDCgov/template/blob/master/CONTRIBUTING.md),\n[public domain notices and disclaimers](https://github.com/CDCgov/template/blob/master/DISCLAIMER.md),\nand [code of conduct](https://github.com/CDCgov/template/blob/master/code-of-conduct.md).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcdcgov%2Fflu-nursing-home-model","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcdcgov%2Fflu-nursing-home-model","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcdcgov%2Fflu-nursing-home-model/lists"}