{"id":19262493,"url":"https://github.com/cdeck3r/r-bayes","last_synced_at":"2025-04-11T16:05:28.535Z","repository":{"id":114500858,"uuid":"102364341","full_name":"cdeck3r/r-bayes","owner":"cdeck3r","description":"Jupyter environment made for Bayesian graphical modeling and inferencing","archived":false,"fork":false,"pushed_at":"2021-04-10T10:59:03.000Z","size":10,"stargazers_count":3,"open_issues_count":0,"forks_count":2,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-03-25T12:07:07.919Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cdeck3r.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-09-04T13:26:21.000Z","updated_at":"2023-06-23T15:35:43.000Z","dependencies_parsed_at":"2023-05-17T09:00:35.580Z","dependency_job_id":null,"html_url":"https://github.com/cdeck3r/r-bayes","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cdeck3r%2Fr-bayes","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cdeck3r%2Fr-bayes/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cdeck3r%2Fr-bayes/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cdeck3r%2Fr-bayes/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cdeck3r","download_url":"https://codeload.github.com/cdeck3r/r-bayes/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248438494,"owners_count":21103409,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-09T19:31:59.221Z","updated_at":"2025-04-11T16:05:28.497Z","avatar_url":"https://github.com/cdeck3r.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# r-bayes\n\nJupyter environment made for Bayesian graphical modeling and inferencing.\n\n## What it Gives You\n\nIt is based on [Jupyter Notebook R Stack](https://github.com/jupyter/docker-stacks/tree/master/r-notebook). \n\nAdditionally, it provides\n\n* jags\n* [rjags](https://cran.r-project.org/package=rjags)\n* [HydeNet](https://cran.r-project.org/package=HydeNet)\n* [bnlearn](https://www.bnlearn.com/)\n* [tidybayes](https://cran.r-project.org/package=tidybayes)\n\n## Basic Usage\n\nBuild the image\n\n```\ndocker build -t r-bayes:latest -f Dockerfiles/Dockerfile.rbayes\n```\n\nSpin up the container using the command\n\n```\ndocker run -it --rm -p 8008:8888 r-bayes:latest\n```\n\nPoint your browser to http://localhost:8008/. \n\nFor other startup options check out [Jupyter Notebook R Stack](https://github.com/jupyter/docker-stacks/tree/master/r-notebook). \n\n## Use with `docker-compose.yml`\n\nDocker compose setups an environment with the directory structure from the repository mounted in the container. The `docker-compose.yml` controls the mount points. Notebooks created in `work` within the container appear in the directory `notebooks` on the host system.\n\n**Setup:** Start in project's root dir and create a `.env` file with the content shown below.\n```\n# .env file\n\n# In the container, this is the directory where the directories from the host are found\n# Example:\nAPP_ROOT=/r-bayes\n\n# the HOST directory containing directories to be mounted into containers\n# Example:\nVOL_DIR=/home/user/r-bayes\n```\n\nCreate docker image\n\n```bash\ndocker-compose build r-bayes\n```\n\nSpin up the container \n\n```bash\ndocker-compose up -d r-bayes\n```\n\nPoint your browser to http://localhost:8008/. \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcdeck3r%2Fr-bayes","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcdeck3r%2Fr-bayes","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcdeck3r%2Fr-bayes/lists"}