{"id":16276901,"url":"https://github.com/cderv/test","last_synced_at":"2026-01-21T05:01:37.794Z","repository":{"id":78261946,"uuid":"193441536","full_name":"cderv/test","owner":"cderv","description":"testing bookdown ","archived":false,"fork":false,"pushed_at":"2019-06-24T04:58:07.000Z","size":64,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"master","last_synced_at":"2025-10-11T09:28:25.611Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Makefile","has_issues":false,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cderv.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-06-24T05:45:48.000Z","updated_at":"2022-10-19T10:04:35.000Z","dependencies_parsed_at":"2023-03-12T03:53:58.602Z","dependency_job_id":null,"html_url":"https://github.com/cderv/test","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/cderv/test","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cderv%2Ftest","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cderv%2Ftest/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cderv%2Ftest/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cderv%2Ftest/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cderv","download_url":"https://codeload.github.com/cderv/test/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cderv%2Ftest/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28627386,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-21T04:47:28.174Z","status":"ssl_error","status_checked_at":"2026-01-21T04:47:22.943Z","response_time":86,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-10T18:51:11.626Z","updated_at":"2026-01-21T05:01:37.767Z","avatar_url":"https://github.com/cderv.png","language":"Makefile","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Content\n\n- [Bug?](#bug?)\n- [Reproduce](#reproduce)\n- [Info](#info)\n\n## Bug?\n\nnot sure what's going on, but latest version of bookdown (0.11) isn't working. bookdown 0.7 seems to work, but still a bit buggy..\n\n#### version 0.7\n\n![v0.7](images/v0.7.png)\n\n#### version 0.11\n\n![v0.11](images/v0.11.png)\n\n## Reproduce\n\n```\ngit clone https://github.com/serine/test\ncd test\nmake\nfirefox docs/check.html\n```\n\n## Info\n\n```\n(ins)[biostation2]~/gitrepos/test (master)$ make clean; make\nrm -rf docs/* rm book/*.rds\nif [ ! -d docs ];then mkdir docs;fi\ncd book; \\\nRscript -e \"bookdown::render_book('.', 'bookdown::gitbook')\"\n\n\nprocessing file: check.Rmd\n  |...........                                                      |  17%\n  ordinary text without R code\n\n  |......................                                           |  33%\nlabel: unnamed-chunk-1\n  |................................                                 |  50%\n  ordinary text without R code\n\n  |...........................................                      |  67%\nlabel: unnamed-chunk-2\n  |......................................................           |  83%\n  ordinary text without R code\n\n  |.................................................................| 100%\nlabel: unnamed-chunk-3\n\noutput file: check.knit.md\n\n/usr/bin/pandoc +RTS -K512m -RTS _main.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output _main.html --email-obfuscation none --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/kirill/R/x86_64-pc-linux-gnu-library/3.5/bookdown/templates/gitbook.html --highlight-style pygments --number-sections --include-in-header /tmp/Rtmpbc1Y6i/rmarkdown-str1fab6c389401.html --mathjax --metadata pagetitle=_main.utf8.md\n\nOutput created: ../docs/check.html\n[1] \"/home/kirill/gitrepos/test/docs/check.html\"\n```\n\n```\nwhich pandoc\n/usr/bin/pandoc\n```\n\n```\npandoc --version\npandoc 2.7.3\nCompiled with pandoc-types 1.17.5.4, texmath 0.11.2.2, skylighting 0.8.1\nDefault user data directory: /home/kirill/.local/share/pandoc or /home/kirill/.pandoc\nCopyright (C) 2006-2019 John MacFarlane\nWeb:  http://pandoc.org\nThis is free software; see the source for copying conditions.\nThere is no warranty, not even for merchantability or fitness\nfor a particular purpose.\n```\n\n```\n(ins)[biostation2]~/gitrepos/test (master)$ R\n\nR version 3.5.1 (2018-07-02) -- \"Feather Spray\"\nCopyright (C) 2018 The R Foundation for Statistical Computing\nPlatform: x86_64-pc-linux-gnu (64-bit)\n\nR is free software and comes with ABSOLUTELY NO WARRANTY.\nYou are welcome to redistribute it under certain conditions.\nType 'license()' or 'licence()' for distribution details.\n\n  Natural language support but running in an English locale\n\nR is a collaborative project with many contributors.\nType 'contributors()' for more information and\n'citation()' on how to cite R or R packages in publications.\n\nType 'demo()' for some demos, 'help()' for on-line help, or\n'help.start()' for an HTML browser interface to help.\nType 'q()' to quit R.\n\n(ins)\u003e sessionInfo()\nR version 3.5.1 (2018-07-02)\nPlatform: x86_64-pc-linux-gnu (64-bit)\nRunning under: Debian GNU/Linux 9 (stretch)\n\nMatrix products: default\nBLAS: /opt/R/3.5.1/lib/R/lib/libRblas.so\nLAPACK: /opt/R/3.5.1/lib/R/lib/libRlapack.so\n\nlocale:\n [1] LC_CTYPE=en_AU.UTF-8       LC_NUMERIC=C\n [3] LC_TIME=en_AU.UTF-8        LC_COLLATE=en_AU.UTF-8\n [5] LC_MONETARY=en_AU.UTF-8    LC_MESSAGES=en_AU.UTF-8\n [7] LC_PAPER=en_AU.UTF-8       LC_NAME=C\n [9] LC_ADDRESS=C               LC_TELEPHONE=C\n[11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C\n\nattached base packages:\n[1] stats     graphics  grDevices utils     datasets  methods   base\n\nloaded via a namespace (and not attached):\n[1] compiler_3.5.1\n(ins)\u003e\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcderv%2Ftest","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcderv%2Ftest","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcderv%2Ftest/lists"}