{"id":38335368,"url":"https://github.com/cedergrouphub/temextraction-webapp","last_synced_at":"2026-01-17T02:55:54.727Z","repository":{"id":107072436,"uuid":"427131500","full_name":"CederGroupHub/TEMExtraction-webapp","owner":"CederGroupHub","description":null,"archived":false,"fork":false,"pushed_at":"2021-12-23T18:09:39.000Z","size":90662,"stargazers_count":2,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-09-09T23:38:56.860Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter 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returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-01-17T02:55:54.097Z","updated_at":"2026-01-17T02:55:54.723Z","avatar_url":"https://github.com/CederGroupHub.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Setup Instructions\n\n## Model Weights\n1) Download [SRCNN weights](https://drive.google.com/file/d/1zmBxzC9SVJm9vciOPLbKzVIVlH09UZtW/view?usp=sharing) and place it in `server/label_scale_bar_detector/OCR/SRCNN-pytorch/weights/`.\n2) Download [Darknet weights](https://drive.google.com/file/d/1CR0chidAN8x7LLWcLHYz4QR7pHfsQB8-/view?usp=sharing) and place it in `server/label_scale_bar_detector/localizer/darknet/backup`.\n3) Download [Mask RCNN weights](https://drive.google.com/file/d/1JwXbYScYNlds5g5JHFwEZLwI5eShyaj4/view?usp=sharing) and place it in `server/Mask_RCNN/logs/tem`.\n\n## Installation\n\nRun `conda env create -f environment.yml`.\nNote: Installation using this yml file has been tested only on MACOSX.\n\n# Running the app\n\n1) `export CORS_DEBUG=\"True\"`\n2) `cd client \u0026\u0026 npm start`.\n3) `cd server \u0026\u0026 uvicorn main:app --reload`.  \n\nThe following is an illustration of the results displayed when a sample TEM image is uploaded.  \n  \n\u003cimg src='web_app.png' width=500\u003e\n\n# Acknowledgements\n\n1) [https://github.com/AlexeyAB/darknet](https://github.com/AlexeyAB/darknet)\n2) [https://github.com/yjn870/SRCNN-pytorch](https://github.com/yjn870/SRCNN-pytorch)\n3) [https://github.com/matterport/Mask_RCNN](https://github.com/matterport/Mask_RCNN)\n\n# Citation\nIf you use this code, please cite the following [manuscript](https://arxiv.org/abs/2112.01689):\n\n```\n@misc{subramanian2021dataset,\n      title={Dataset of gold nanoparticle sizes and morphologies extracted from literature-mined microscopy images}, \n      author={Akshay Subramanian and Kevin Cruse and Amalie Trewartha and Xingzhi Wang and Paul Alivisatos and Gerbrand Ceder},\n      year={2021},\n      eprint={2112.01689},\n      archivePrefix={arXiv},\n      primaryClass={cond-mat.mtrl-sci}\n}\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcedergrouphub%2Ftemextraction-webapp","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcedergrouphub%2Ftemextraction-webapp","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcedergrouphub%2Ftemextraction-webapp/lists"}