{"id":22455597,"url":"https://github.com/cerit-sc/scipion-docker","last_synced_at":"2025-08-02T02:32:24.102Z","repository":{"id":37762574,"uuid":"317595002","full_name":"CERIT-SC/scipion-docker","owner":"CERIT-SC","description":"Scipion (Cryo em image processing framework (https://scipion.i2pc.es/)) adapted to run in Kubernetes.","archived":false,"fork":false,"pushed_at":"2024-01-29T14:30:56.000Z","size":1368,"stargazers_count":0,"open_issues_count":1,"forks_count":4,"subscribers_count":6,"default_branch":"master","last_synced_at":"2024-03-26T09:32:54.703Z","etag":null,"topics":["cryo-em","cryoem","cuda","desktop","kubernetes","scipion","vnc"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/CERIT-SC.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2020-12-01T16:05:54.000Z","updated_at":"2023-02-28T10:00:35.000Z","dependencies_parsed_at":"2023-11-09T12:22:05.903Z","dependency_job_id":"e33412dd-8b15-43db-8564-9b3143dca50d","html_url":"https://github.com/CERIT-SC/scipion-docker","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CERIT-SC%2Fscipion-docker","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CERIT-SC%2Fscipion-docker/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CERIT-SC%2Fscipion-docker/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CERIT-SC%2Fscipion-docker/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CERIT-SC","download_url":"https://codeload.github.com/CERIT-SC/scipion-docker/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":228426062,"owners_count":17917790,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cryo-em","cryoem","cuda","desktop","kubernetes","scipion","vnc"],"created_at":"2024-12-06T07:12:23.594Z","updated_at":"2024-12-06T07:12:24.243Z","avatar_url":"https://github.com/CERIT-SC.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"\n# Scipion-in-Kubernetes\n\nThis project deals with the use of the [Scipion](https://scipion.i2pc.es/) application and its 3DEM tools in a cloud environment. Scipion and its tools are packed in Docker images and ready to run on Kubernetes. The solution includes GUI with a browser-based remote desktop, and is capable of using a graphics card for CUDA-accelerated tools. [Onedata](https://onedata.org/) is used as a storage with dataset (e.g. data scanned by CryoEM) and project data.\n\nThis application is available on [Rancher](rancher.cloud.e-infra.cz/) of the e-INFRA infrastructure and uses [Datahub](https://datahub.egi.eu/) as a Onedata installation.\n\nFor more info about running the application, check the Rancher e-INFRA cloud [documentation](https://docs.cerit.io/docs/scipion/scipion.html).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcerit-sc%2Fscipion-docker","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcerit-sc%2Fscipion-docker","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcerit-sc%2Fscipion-docker/lists"}