{"id":21282466,"url":"https://github.com/cgoliver/rna-popgen-notebook","last_synced_at":"2025-07-28T10:34:12.216Z","repository":{"id":43630885,"uuid":"61134333","full_name":"cgoliver/RNA-Popgen-Notebook","owner":"cgoliver","description":"Jupyter notebook for RNA evolutionary algorithm and subsequent population genetics and BioPython tools.","archived":false,"fork":false,"pushed_at":"2016-06-14T15:47:07.000Z","size":211,"stargazers_count":6,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-04-06T02:51:12.149Z","etag":null,"topics":["biopython","jupyter-notebook","population-genetics","rna","rna-evolutionary-algorithm"],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cgoliver.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-06-14T15:29:42.000Z","updated_at":"2024-10-28T14:34:08.000Z","dependencies_parsed_at":"2022-08-25T18:51:14.174Z","dependency_job_id":null,"html_url":"https://github.com/cgoliver/RNA-Popgen-Notebook","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/cgoliver/RNA-Popgen-Notebook","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cgoliver%2FRNA-Popgen-Notebook","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cgoliver%2FRNA-Popgen-Notebook/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cgoliver%2FRNA-Popgen-Notebook/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cgoliver%2FRNA-Popgen-Notebook/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cgoliver","download_url":"https://codeload.github.com/cgoliver/RNA-Popgen-Notebook/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cgoliver%2FRNA-Popgen-Notebook/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":267502266,"owners_count":24098103,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-07-28T02:00:09.689Z","response_time":68,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["biopython","jupyter-notebook","population-genetics","rna","rna-evolutionary-algorithm"],"created_at":"2024-11-21T10:54:45.791Z","updated_at":"2025-07-28T10:34:12.145Z","avatar_url":"https://github.com/cgoliver.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# RNA-Popgen-Notebook\nJupyter notebook for RNA evolutionary algorithm and subsequent population genetics and BioPython tools.\n\nThis notebook takes you from building populations using RNA structure-function as a model for evolving populations to studying these evolved populations using some basic population genetics tools.\n\nThe file `Population_Genetics_work.ipynb` has '...' placeholders where you can fill in the code yourself if you want to get some programming practice. The file `Population_Genetics.ipynb` is the fully coded version. You will find an implementation of the Nussinov RNA folding algorithm in the file `fold.py`.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcgoliver%2Frna-popgen-notebook","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcgoliver%2Frna-popgen-notebook","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcgoliver%2Frna-popgen-notebook/lists"}