{"id":17493458,"url":"https://github.com/ciaranomara/stamp.jl","last_synced_at":"2025-03-28T17:27:51.914Z","repository":{"id":86023665,"uuid":"190513208","full_name":"CiaranOMara/STAMP.jl","owner":"CiaranOMara","description":"Load GEM's default PFM output","archived":false,"fork":false,"pushed_at":"2020-05-15T13:10:46.000Z","size":10,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"develop","last_synced_at":"2024-10-19T15:20:06.471Z","etag":null,"topics":["bioinformatics","julia","pfm","stamp"],"latest_commit_sha":null,"homepage":"","language":"Julia","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/CiaranOMara.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-06-06T04:20:15.000Z","updated_at":"2020-05-15T13:10:48.000Z","dependencies_parsed_at":"2023-03-04T09:45:22.065Z","dependency_job_id":null,"html_url":"https://github.com/CiaranOMara/STAMP.jl","commit_stats":{"total_commits":7,"total_committers":1,"mean_commits":7.0,"dds":0.0,"last_synced_commit":"b5509a93cf6415795c874777c5760a6405d95914"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CiaranOMara%2FSTAMP.jl","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CiaranOMara%2FSTAMP.jl/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CiaranOMara%2FSTAMP.jl/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CiaranOMara%2FSTAMP.jl/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CiaranOMara","download_url":"https://codeload.github.com/CiaranOMara/STAMP.jl/tar.gz/refs/heads/develop","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246068302,"owners_count":20718505,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","julia","pfm","stamp"],"created_at":"2024-10-19T12:07:30.383Z","updated_at":"2025-03-28T17:27:51.684Z","avatar_url":"https://github.com/CiaranOMara.png","language":"Julia","funding_links":[],"categories":[],"sub_categories":[],"readme":"# STAMP.jl\n\n[![Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](http://www.repostatus.org/badges/latest/wip.svg)](http://www.repostatus.org/#wip)\n[![Latest Release](https://img.shields.io/github/release/CiaranOMara/STAMP.jl.svg)](https://github.com/CiaranOMara/STAMP.jl/releases/latest)\n[![MIT license](https://img.shields.io/badge/license-MIT-green.svg)](https://github.com/CiaranOMara/STAMP.jl/blob/master/LICENSE)\n[![Unit tests](https://github.com/CiaranOMara/STAMP.jl/workflows/Unit%20tests/badge.svg?branch=master)](https://github.com/CiaranOMara/STAMP.jl/actions?query=workflow%3A%22Unit+tests%22+branch%3Amaster)\n[![codecov](https://codecov.io/gh/CiaranOMara/STAMP.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/CiaranOMara/STAMP.jl)\n\n\u003e This project follows the [semver](http://semver.org) pro forma and uses the [git-flow branching model](https://nvie.com/posts/a-successful-git-branching-model/ \"original blog post\").\n\n## Description\nInitially written to load [GEM](http://groups.csail.mit.edu/cgs/gem/)'s default PFM output.\n\nInspired by [FASTX.jl](https://github.com/BioJulia/FASTX.jl).\n\n## Installation\nInstall STAMP from the Julia REPL:\n```julia\n] clone https://github.com/CiaranOMara/STAMP.jl\n```\n\n## Usage\n\n### Read records\n\n```julia\nusing STAMP\n\nreader = open(STAMP.Reader, file)\nrecord = read(reader) #TODO: read all records.\n```\n\n```julia\nusing STAMP\n\nreader = open(STAMP.Reader, file)\nfor record in reader\n    # Do something\nend\nclose(reader)\n\n```\n\n```julia\nusing STAMP\n\nreader = open(STAMP.Reader, file)\nrecord = STAMP.Record()\nread!(reader, record))\n# Do something\nclose(reader)\n```\n\n```julia\nusing STAMP\n\nopen(STAMP.Reader, file) do reader\n    for record in reader\n        # Do something\n    end\nend\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fciaranomara%2Fstamp.jl","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fciaranomara%2Fstamp.jl","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fciaranomara%2Fstamp.jl/lists"}