{"id":19298474,"url":"https://github.com/clavellab/maldipickrgui","last_synced_at":"2025-09-13T15:09:23.397Z","repository":{"id":211930632,"uuid":"730200011","full_name":"ClavelLab/maldipickrGUI","owner":"ClavelLab","description":"Workflow template to dereplicate and cherry-pick mass spectrometry spectraAn interactive interface to run reproducible workflow to dereplicate and cherry-pick mass spectrometry spectra with the 'maldipickr' package.","archived":false,"fork":false,"pushed_at":"2023-12-18T15:09:19.000Z","size":89,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-02-24T01:13:58.264Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ClavelLab.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-12-11T12:17:48.000Z","updated_at":"2024-03-13T05:41:08.000Z","dependencies_parsed_at":"2025-01-05T22:12:39.999Z","dependency_job_id":"7bce142f-72cb-4f6d-bf55-34d285690f27","html_url":"https://github.com/ClavelLab/maldipickrGUI","commit_stats":null,"previous_names":["clavellab/maldipickrgui"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/ClavelLab/maldipickrGUI","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ClavelLab%2FmaldipickrGUI","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ClavelLab%2FmaldipickrGUI/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ClavelLab%2FmaldipickrGUI/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ClavelLab%2FmaldipickrGUI/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ClavelLab","download_url":"https://codeload.github.com/ClavelLab/maldipickrGUI/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ClavelLab%2FmaldipickrGUI/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274398412,"owners_count":25277466,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-10T02:00:12.551Z","response_time":83,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-09T23:08:10.105Z","updated_at":"2025-09-13T15:09:23.337Z","avatar_url":"https://github.com/ClavelLab.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, include = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"man/figures/README-\",\n  out.width = \"100%\"\n)\n```\n\n# maldipickrGUI\n\n\u003c!-- badges: start --\u003e\n[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)\n\u003c!-- badges: end --\u003e\n\nThe goal of `{maldipickrGUI}` is to provide an interactive interface to run reproducible workflow to dereplicate and cherry-pick mass spectrometry spectra using the [`{maldipickr}`](https://cran.r-project.org/package=maldipickr), in order to reduce the redundancy of bacterial isolates.\n\nThe interface is a [`{shiny}`](https://cran.r-project.org/package=shiny) application, built using the robust [`{golem}`](https://cran.r-project.org/package=golem) framework.\nReproducible workflows are created using [`{targets}`](https://docs.ropensci.org/targets/).\n\n\n## Installation\n\nYou can install the development version of `{maldipickrGUI}` using\nthe following command in R:\n\n```{r install_github, eval = FALSE}\nremotes::install_github(\"ClavelLab/maldipickrGUI\")\n```\n\n## Code of Conduct\n\nPlease note that the `{maldipickrGUI}` project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/1/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fclavellab%2Fmaldipickrgui","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fclavellab%2Fmaldipickrgui","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fclavellab%2Fmaldipickrgui/lists"}