{"id":20387080,"url":"https://github.com/cmdcolin/frameviewer","last_synced_at":"2025-03-04T23:26:01.572Z","repository":{"id":137212689,"uuid":"81167018","full_name":"cmdcolin/frameviewer","owner":"cmdcolin","description":"A JBrowse plugin for viewing which reading frame a coding region is in","archived":false,"fork":false,"pushed_at":"2018-02-19T01:13:42.000Z","size":11049,"stargazers_count":0,"open_issues_count":3,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-01-15T08:45:15.805Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"JavaScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cmdcolin.png","metadata":{"files":{"readme":"README.md","changelog":"ChangeLog.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2017-02-07T04:40:37.000Z","updated_at":"2017-02-07T04:41:12.000Z","dependencies_parsed_at":null,"dependency_job_id":"a009a490-febb-4a48-b631-49a9055bb842","html_url":"https://github.com/cmdcolin/frameviewer","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cmdcolin%2Fframeviewer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cmdcolin%2Fframeviewer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cmdcolin%2Fframeviewer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cmdcolin%2Fframeviewer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cmdcolin","download_url":"https://codeload.github.com/cmdcolin/frameviewer/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":241937067,"owners_count":20045172,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-15T02:42:52.639Z","updated_at":"2025-03-04T23:26:01.554Z","avatar_url":"https://github.com/cmdcolin.png","language":"JavaScript","readme":"# frameviewer\n\nA JBrowse plugin for viewing protein/DNA sequences of coding sequences of genes.\n\n## Screenshot\n\n![](img/1.png)\nFigure 1. Shows protein translations and reading frames for a gene\n\n## Configuration\n\n* style.frameHeight - the height of the feature that contains the frames. Default: 50px\n* showProtein - show the protein sequence of coding regions on the glyph. Default: false\n* showDNA - show the DNA of coding regions on the glyph. Default: false\n\n## Example\n\n    {\n     \"label\" : \"dictyBase frames\",\n     \"urlTemplate\" : \"tracks/dictyBase/{refseq}/trackData.json\",\n     \"storeClass\" : \"JBrowse/Store/SeqFeature/NCList\",\n     \"type\" : \"FrameViewer/View/Track/Frames\",\n     \"showProtein\": true\n    }\n\nThe test/data/ directory contains a sample config also.\n\n## Installation\n\nDownload to plugins/FrameViewer and add\n\n    \"plugins\": [\"FrameViewer\"]\n\nto jbrowse_conf.json or trackList.json. See JBrowse FAQ on installing plugins for more details\n\n\n## Feedback\n\nPlease let me know if you have feedback or know of crazy biology corner cases that need covering!\n\n\nNote: code currently contains glitches that make this not production ready\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcmdcolin%2Fframeviewer","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcmdcolin%2Fframeviewer","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcmdcolin%2Fframeviewer/lists"}