{"id":20387048,"url":"https://github.com/cmdcolin/jbrowse_segmentcnv","last_synced_at":"2025-09-01T20:33:23.204Z","repository":{"id":42813985,"uuid":"268910052","full_name":"cmdcolin/jbrowse_segmentcnv","owner":"cmdcolin","description":null,"archived":false,"fork":false,"pushed_at":"2022-03-26T20:10:15.000Z","size":222,"stargazers_count":1,"open_issues_count":5,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-01-15T08:44:55.130Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"JavaScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cmdcolin.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2020-06-02T21:14:30.000Z","updated_at":"2020-06-03T12:50:01.000Z","dependencies_parsed_at":"2022-09-07T08:11:35.283Z","dependency_job_id":null,"html_url":"https://github.com/cmdcolin/jbrowse_segmentcnv","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cmdcolin%2Fjbrowse_segmentcnv","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cmdcolin%2Fjbrowse_segmentcnv/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cmdcolin%2Fjbrowse_segmentcnv/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cmdcolin%2Fjbrowse_segmentcnv/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cmdcolin","download_url":"https://codeload.github.com/cmdcolin/jbrowse_segmentcnv/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":241937028,"owners_count":20045166,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-15T02:42:25.972Z","updated_at":"2025-03-04T23:25:47.563Z","avatar_url":"https://github.com/cmdcolin.png","language":"JavaScript","funding_links":[],"categories":[],"sub_categories":[],"readme":"# segmentcnv\n\nA JBrowse plugin for plotting SEG files from GDC API or similar\n\n\n## Track options\n\n\n* urlTemplate - a GDC link to a .seg.txt file\n\n\n## Screenshot\n\n![](img/1.png)\n\nFigure. Wiggle track display of raw seg.txt CNV data from the GDC repository\n\n## Installation\n\nClone the repository to the jbrowse plugins subdirectory and name it SegmentCNV\n\n    git clone https://github.com/cmdcolin/jbrowse_segmentcnv SegmentCNV\n\nThen add the plugin to your configuration, e.g. \"plugins\": [\"SegmentCNV\"]\n\nSee http://gmod.org/wiki/JBrowse_FAQ#How_do_I_install_a_plugin for details\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcmdcolin%2Fjbrowse_segmentcnv","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcmdcolin%2Fjbrowse_segmentcnv","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcmdcolin%2Fjbrowse_segmentcnv/lists"}