{"id":23057238,"url":"https://github.com/codebiogenomics/pansam","last_synced_at":"2025-08-15T06:32:20.293Z","repository":{"id":267351304,"uuid":"900957468","full_name":"applicativesystem/rust-samtools","owner":"applicativesystem","description":"all rust-samtools combined into a single application","archived":false,"fork":false,"pushed_at":"2024-12-09T20:22:40.000Z","size":1,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-12-09T21:26:35.466Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-12-09T19:27:37.000Z","updated_at":"2024-12-09T20:22:44.000Z","dependencies_parsed_at":"2024-12-09T21:27:02.267Z","dependency_job_id":"49a840e8-6938-424b-b424-97841f160afb","html_url":"https://github.com/applicativesystem/rust-samtools","commit_stats":null,"previous_names":["applicativesystem/rust-samtools"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-samtools","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-samtools/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-samtools/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-samtools/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/rust-samtools/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":229897445,"owners_count":18141135,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-16T02:11:38.958Z","updated_at":"2025-08-15T06:32:20.284Z","avatar_url":"https://github.com/applicativesystem.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# pansam\n\n - all rust-samtools combined into a single application specific for the long read technologies and async threaded.\n\n \u003cimg src=\"https://github.com/IBCHgenomic/pansam/blob/main/pansam.png\" width=\"350\" /\u003e\n\n ![](https://github.com/IBCHgenomic/eVaiutilities/blob/main/logo.png)\n\n ```\n cargo build\n ```\n \n ```\n Usage: pansam \u003cCOMMAND\u003e\n\n Commands:\n  generateid              generate ids for all the samtools id present in the samfile\n  generateidrange         generate ids for the specific range in the samtools file\n  extractor               extracts the specific ids from the samfile\n  viewer                  view the color coded reads for the specific region\n  tag-viewer              view the colour coded regions for the tags\n  sam-up-down-align-view  upstream and downstream regions,prankaligner and visualization of the alignments\n  sam-up-down-align       allows for the extraction of the upstream and downstream regions from the samfile\n  filter                  allows for the filtering of the samfile\n  filter-range            allows for the filtering of the samfile with specified range\n  help                    Print this message or the help of the given subcommand(s)\n\n Options:\n  -h, --help     Print help\n  -V, --version  Print version\n ``` \n\nGaurav Sablok Instytut Chemii Bioorganicznej Polskiej Akademii Nauk ul. Noskowskiego 12/14 | 61-704, Poznań Poland\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcodebiogenomics%2Fpansam","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcodebiogenomics%2Fpansam","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcodebiogenomics%2Fpansam/lists"}