{"id":17754614,"url":"https://github.com/codecreatede/rust-nuc-iter","last_synced_at":"2025-03-15T04:31:34.558Z","repository":{"id":259264499,"uuid":"876325517","full_name":"sciencegenome/genome-longread-count","owner":"sciencegenome","description":"datastructure rustlang faster iteration for genome, short and long reads","archived":false,"fork":false,"pushed_at":"2025-01-15T20:27:53.000Z","size":7737,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-01-24T19:37:21.464Z","etag":null,"topics":["bioinformatics","genome-classification","genome-informatics","rust-crate","rust-lang","sequence-classification","sequencing-data"],"latest_commit_sha":null,"homepage":"","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sciencegenome.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-10-21T19:23:40.000Z","updated_at":"2025-01-15T21:14:40.000Z","dependencies_parsed_at":"2025-01-24T19:47:27.007Z","dependency_job_id":null,"html_url":"https://github.com/sciencegenome/genome-longread-count","commit_stats":null,"previous_names":["codecreatede/rust-nuc-iter","codecreatede/rust-genome-longread-count","applicativesystem/rust-genome-longread-count","sciencegenome/rust-genome-longread-count","sciencegenome/genome-longread-count"],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciencegenome%2Fgenome-longread-count","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciencegenome%2Fgenome-longread-count/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciencegenome%2Fgenome-longread-count/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciencegenome%2Fgenome-longread-count/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sciencegenome","download_url":"https://codeload.github.com/sciencegenome/genome-longread-count/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":243685506,"owners_count":20330980,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","genome-classification","genome-informatics","rust-crate","rust-lang","sequence-classification","sequencing-data"],"created_at":"2024-10-26T14:07:20.796Z","updated_at":"2025-03-15T04:31:34.378Z","avatar_url":"https://github.com/sciencegenome.png","language":"Rust","funding_links":[],"categories":[],"sub_categories":[],"readme":"# rust-nuc-iter\n\n- A kmer origin finding faster than the recent implementation of the recent implementation. Back to sequences: Find the origin of 𝑘-mers DOI: 10.21105/joss.07066.\n- I implemented the rust async programming to index the kmer first over a window size and then use that to make the set of the kmers, so that you have less search space and using that to search the kmer in the file provided\n- It only searchers for the unique hashes and their location. to make it even faster.It support genome and short and long illumina reads.\n- adding docker and usage.\n\nGaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcodecreatede%2Frust-nuc-iter","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcodecreatede%2Frust-nuc-iter","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcodecreatede%2Frust-nuc-iter/lists"}