{"id":39729811,"url":"https://github.com/cogdisreslab/biopathnet","last_synced_at":"2026-01-18T11:00:39.343Z","repository":{"id":41868549,"uuid":"297465847","full_name":"CogDisResLab/BioPathNet","owner":"CogDisResLab","description":null,"archived":false,"fork":false,"pushed_at":"2025-11-04T15:32:31.000Z","size":42201,"stargazers_count":2,"open_issues_count":2,"forks_count":2,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-11-04T17:20:04.550Z","etag":null,"topics":["bioinformatics","bioinformatics-pipeline","ilincs","r","transcriptomics"],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/CogDisResLab.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2020-09-21T21:31:19.000Z","updated_at":"2025-11-04T15:32:35.000Z","dependencies_parsed_at":"2022-08-11T19:40:52.107Z","dependency_job_id":"5255bca7-16a1-43c3-a947-4e9ac2aac3d8","html_url":"https://github.com/CogDisResLab/BioPathNet","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/CogDisResLab/BioPathNet","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CogDisResLab%2FBioPathNet","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CogDisResLab%2FBioPathNet/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CogDisResLab%2FBioPathNet/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CogDisResLab%2FBioPathNet/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CogDisResLab","download_url":"https://codeload.github.com/CogDisResLab/BioPathNet/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CogDisResLab%2FBioPathNet/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28535156,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-18T10:13:46.436Z","status":"ssl_error","status_checked_at":"2026-01-18T10:13:11.045Z","response_time":98,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","bioinformatics-pipeline","ilincs","r","transcriptomics"],"created_at":"2026-01-18T11:00:21.938Z","updated_at":"2026-01-18T11:00:39.338Z","avatar_url":"https://github.com/CogDisResLab.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, include = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"man/figures/README-\",\n  out.width = \"100%\"\n)\n```\n\n# BioPathNet\n\n\u003c!-- badges: start --\u003e\n\u003c!-- [![DOI](https://zenodo.org/badge/301042598.svg)](https://zenodo.org/badge/latestdoi/301042598) --\u003e\n[![GitHub issues](https://img.shields.io/github/issues/AliSajid/BioPathNet)](https://github.com/AliSajid/BioPathNet/issues)\n[![GitHub forks](https://img.shields.io/github/forks/AliSajid/BioPathNet)](https://github.com/AliSajid/BioPathNet/network)\n[![GitHub stars](https://img.shields.io/github/stars/AliSajid/BioPathNet)](https://github.com/AliSajid/BioPathNet/stargazers)\n[![R build status](https://github.com/AliSajid/BioPathNet/workflows/R-CMD-check/badge.svg)](https://github.com/AliSajid/BioPathNet/actions)\n[![codecov](https://codecov.io/gh/AliSajid/BioPathNet/branch/main/graph/badge.svg?token=HP1VFCRZ0M)]()\n\n![GitHub release (latest SemVer including pre-releases)](https://img.shields.io/github/v/release/AliSajid/BioPathNet?include_prereleases\u0026label=latest-release)\n![GitHub release (latest SemVer)](https://img.shields.io/github/v/release/AliSajid/BioPathNet?label=latest-stable)\n[![GitHub license](https://img.shields.io/github/license/AliSajid/BioPathNet)](https://github.com/AliSajid/BioPathNet/blob/main/LICENSE)\n\n![GitHub language count](https://img.shields.io/github/languages/count/AliSajid/BioPathNet)\n![GitHub top language](https://img.shields.io/github/languages/top/AliSajid/BioPathNet)\n![Lines of code](https://img.shields.io/tokei/lines/github/AliSajid/BioPathNet)\n![GitHub code size in bytes](https://img.shields.io/github/languages/code-size/AliSajid/BioPathNet)\n![GitHub repo size](https://img.shields.io/github/repo-size/AliSajid/BioPathNet)\n\n\u003c!-- badges: end --\u003e\n\nThe goal of BioPathNet is to ...\n\n## Installation\n\nYou can install the released version of BioPathNet from [CRAN](https://CRAN.R-project.org) with:\n\n``` r\ninstall.packages(\"BioPathNet\")\n```\n\nAnd the development version from [GitHub](https://github.com/) with:\n\n``` r\n# install.packages(\"devtools\")\ndevtools::install_github(\"AliSajid/BioPathNet\")\n```\n## Example\n\nThis is a basic example which shows you how to solve a common problem:\n\n```{r example}\nlibrary(BioPathNet)\n## basic example code\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcogdisreslab%2Fbiopathnet","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcogdisreslab%2Fbiopathnet","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcogdisreslab%2Fbiopathnet/lists"}