{"id":18961624,"url":"https://github.com/combat-tb/combat-tb-neodb","last_synced_at":"2026-04-29T09:36:41.211Z","repository":{"id":47710628,"uuid":"103257716","full_name":"COMBAT-TB/combat-tb-neodb","owner":"COMBAT-TB","description":" :whale: combatTB Neo4j Database","archived":false,"fork":false,"pushed_at":"2021-08-17T05:43:10.000Z","size":21548,"stargazers_count":1,"open_issues_count":2,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-01-01T04:52:43.417Z","etag":null,"topics":["apoc","bioinformatics","cdc1551","docker","graph-database","h37rv","neo4j","tuberculosis"],"latest_commit_sha":null,"homepage":"https://combattb.org/combat-tb-neodb","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/COMBAT-TB.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-09-12T10:38:47.000Z","updated_at":"2021-08-17T05:16:17.000Z","dependencies_parsed_at":"2022-08-23T05:31:47.672Z","dependency_job_id":null,"html_url":"https://github.com/COMBAT-TB/combat-tb-neodb","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/COMBAT-TB%2Fcombat-tb-neodb","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/COMBAT-TB%2Fcombat-tb-neodb/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/COMBAT-TB%2Fcombat-tb-neodb/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/COMBAT-TB%2Fcombat-tb-neodb/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/COMBAT-TB","download_url":"https://codeload.github.com/COMBAT-TB/combat-tb-neodb/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":239958283,"owners_count":19724925,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["apoc","bioinformatics","cdc1551","docker","graph-database","h37rv","neo4j","tuberculosis"],"created_at":"2024-11-08T14:13:46.852Z","updated_at":"2026-04-01T15:30:18.380Z","avatar_url":"https://github.com/COMBAT-TB.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"# [Combat-TB-NeoDB](https://neodb.sanbi.ac.za)\n\n[![Build Status](https://travis-ci.org/COMBAT-TB/combat-tb-neodb.svg?branch=master)](https://travis-ci.org/COMBAT-TB/combat-tb-neodb) [![Documentation Status](https://readthedocs.org/projects/combat-tb-db/badge/?version=latest)](https://combat-tb-db.readthedocs.io/en/latest/?badge=latest) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.1219127.svg)](https://doi.org/10.5281/zenodo.1219127)\n\n**[Combat-TB](https://combattb.org/)-NeoDB: fostering Tuberculosis research through integrative analysis using graph database technologies.**\n\n[Combat-TB](https://combattb.org/)-NeoDB is an integrated _M.tuberculosis (M.tb)_ ‘omics’ knowledge-base. NeoDB is based on Neo4j and enables researchers to execute complex federated queries by linking well-known, curated and widely used _M.tb_ data resources, and supplementary Tuberculosis variants data from published literature. [Combat-TB](https://combattb.org/)-NeoDB was created by binding the labeled property graph model to a consensus-controlled ontology.\n\n**A publicly accessible instance is available at**: [https://neodb.sanbi.ac.za](https://neodb.sanbi.ac.za)\n\n## Purpose\n\nTo enable _M.tb_ researchers to execute *ad hoc* complex federated queries with the\nability to explore data interactively by linking well-known, curated and widely used _M.tb_ data resources, and supplementary TB variants data from published literature.\n\n## Installation\n\nTo avoid the trouble of environment setup,\n[running the database in a Docker container](https://combattb.org/combat-tb-neodb/installation/#using-docker) is highly recommended.\n\nOtherwise, a manual installation guide can be found [here](https://combattb.org/combat-tb-neodb/installation/#standalone).\n\n## Graph Model\n\n![NeoDB_MODEL](docs/images/neodbschema.png)\n\n## Issues\n\nPlease report any issues [here](https://github.com/COMBAT-TB/combat-tb-neodb/issues).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcombat-tb%2Fcombat-tb-neodb","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcombat-tb%2Fcombat-tb-neodb","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcombat-tb%2Fcombat-tb-neodb/lists"}