{"id":44257528,"url":"https://github.com/compomics/mascotdatfile","last_synced_at":"2026-02-10T16:36:00.208Z","repository":{"id":29696200,"uuid":"33238902","full_name":"CompOmics/mascotdatfile","owner":"CompOmics","description":"Java API for MS/MS search results by Mascot (Matrix Science).","archived":false,"fork":false,"pushed_at":"2021-10-12T10:15:02.000Z","size":31227,"stargazers_count":3,"open_issues_count":1,"forks_count":0,"subscribers_count":17,"default_branch":"master","last_synced_at":"2025-09-10T05:09:50.660Z","etag":null,"topics":["bioinformatics","mascot","proteomics"],"latest_commit_sha":null,"homepage":"http://compomics.github.io/projects/mascotdatfile.html","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/CompOmics.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE-2.0.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-04-01T09:32:44.000Z","updated_at":"2021-10-12T10:15:07.000Z","dependencies_parsed_at":"2022-09-05T15:41:47.000Z","dependency_job_id":null,"html_url":"https://github.com/CompOmics/mascotdatfile","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/CompOmics/mascotdatfile","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CompOmics%2Fmascotdatfile","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CompOmics%2Fmascotdatfile/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CompOmics%2Fmascotdatfile/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CompOmics%2Fmascotdatfile/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CompOmics","download_url":"https://codeload.github.com/CompOmics/mascotdatfile/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CompOmics%2Fmascotdatfile/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29307918,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-10T16:09:25.305Z","status":"ssl_error","status_checked_at":"2026-02-10T16:08:52.170Z","response_time":65,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","mascot","proteomics"],"created_at":"2026-02-10T16:35:59.099Z","updated_at":"2026-02-10T16:36:00.201Z","avatar_url":"https://github.com/CompOmics.png","language":"Java","funding_links":[],"categories":[],"sub_categories":[],"readme":"# MascotDatfile\n\n * [Project Description](#project-description)\n * [Download](#download)\n * [Usage](#usage)\n * [Project Support](#project-support)\n\n----\n\n## Project Description\n\nProteomics bioinformatics deals with organising and analysing large amounts of information generated during proteomic analyses. The vast amounts of mass spectrometry data are typically interpreted by database search algorithms such as Mascot Server from [Matrix Science](http://www.matrixscience.com/). The results of such a search are presented in an user-friendly HTML page, yet, this is inconvenient when further processing is required. Therefore we have developed the *MascotDatfile* library which transforms a flat file into a dynamic object model.\n\n*Helsens et al. MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results. Proteomics (2007) vol. 7 (3) pp. 364-6 ([PUBMED ID:17203510](http://www.ncbi.nlm.nih.gov/pubmed/17203510))*\n\n[Go to top of page](#mascotdatfile)\n\n----\n\n## Download\n\n| Download | Version | Release info |\n|:--:|:--:|:--:|\n| [![download](https://github.com/compomics/mascotdatfile/wiki/images/download_button.png)](https://genesis.ugent.be/maven2/com/compomics/mascotdatfile/3.6.1/mascotdatfile-3.6.1.zip) | *3.6.1 - All platforms* |    [Release notes](https://github.com/compomics/mascotdatfile/wiki/ReleaseNotes) |\n\n[Go to top of page](#mascotdatfile)\n\n----\n\n## Usage\nSee the [wiki](https://github.com/compomics/mascotdatfile/wiki) for additional information on how to setup, run and configure *MascotDatfile*.\n\n[Go to top of page](#mascotdatfile)\n\n----\n\n## Project Support\n\nThe *MascotDatfile* project is grateful for the support by:\n\n| Compomics | VIB | Ghent University|\n|:--:|:--:|:--:|\n| [![compomics](http://genesis.ugent.be/uvpublicdata/image/compomics.png)](http://www.compomics.com) | [![vib](http://genesis.ugent.be/uvpublicdata/image/vib.png)](http://www.vib.be) | [![](http://genesis.ugent.be/uvpublicdata/image/ugent.png)](http://www.ugent.be/en) |\n\n[Go to top of page](#mascotdatfile)\n\n----\n\n| IntelliJ | Netbeans | Java | Maven |\n|:--:|:--:|:--:|:--:|\n| [![intellij](http://genesis.ugent.be/uvpublicdata/image/icon_IntelliJIDEA.png)](https://www.jetbrains.com/idea/) | [![netbeans](https://netbeans.org/images_www/visual-guidelines/NB-logo-single.jpg)](https://netbeans.org/) | [![java](http://genesis.ugent.be/uvpublicdata/image/java.png)](http://java.com/en/) | [![maven](http://genesis.ugent.be/uvpublicdata/image/maven.png)](http://maven.apache.org/) |\n\n[Go to top of page](#mascotdatfile)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcompomics%2Fmascotdatfile","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcompomics%2Fmascotdatfile","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcompomics%2Fmascotdatfile/lists"}