{"id":51512922,"url":"https://github.com/computorg/jds2025-workshop-template","last_synced_at":"2026-07-08T08:02:29.028Z","repository":{"id":297570919,"uuid":"996781270","full_name":"computorg/jds2025-workshop-template","owner":"computorg","description":null,"archived":false,"fork":false,"pushed_at":"2025-06-06T06:04:26.000Z","size":3255,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2025-06-06T07:19:32.207Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/computorg.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-06-05T13:03:32.000Z","updated_at":"2025-06-06T06:05:09.000Z","dependencies_parsed_at":"2025-06-06T07:29:45.033Z","dependency_job_id":null,"html_url":"https://github.com/computorg/jds2025-workshop-template","commit_stats":null,"previous_names":["computorg/jds2025-workshop-template"],"tags_count":0,"template":true,"template_full_name":null,"purl":"pkg:github/computorg/jds2025-workshop-template","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/computorg%2Fjds2025-workshop-template","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/computorg%2Fjds2025-workshop-template/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/computorg%2Fjds2025-workshop-template/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/computorg%2Fjds2025-workshop-template/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/computorg","download_url":"https://codeload.github.com/computorg/jds2025-workshop-template/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/computorg%2Fjds2025-workshop-template/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":35257142,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-07-08T02:00:06.796Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-07-08T08:02:28.521Z","updated_at":"2026-07-08T08:02:29.020Z","avatar_url":"https://github.com/computorg.png","language":"TeX","funding_links":[],"categories":[],"sub_categories":[],"readme":"# jds2025-workshop-template\n\n[Workshop site](https://computo.sfds.asso.fr/jds2025-workshop/) for the JDS 2025 workshop on reproducible research.\n\n# Template installation\n\n![](img/use-this-template.png)\n\n![](img/create-new-repo.png)\n\n![](img/select-all-branches.png)\n\n![](img/clone-repo.png)\n\n# Quarto render usage \n\nThere are two ways to make the render:\n\n## Using [Apptainer](https://apptainer.org/docs/admin/main/installation.html) containers\n\nFirst download the container image for your language of choice and your CPU architecture:\n\nAll downloads are available on this link :\n\n[https://filesender.renater.fr/?s=download\u0026token=097272f1-f3a6-40ba-98b9-d517e27d2f80](https://filesender.renater.fr/?s=download\u0026token=097272f1-f3a6-40ba-98b9-d517e27d2f80)\n\n\n### Apptainer usage\n\n```shell\napptainer run --writable-tmpfs \u003ccontainer_image.sif\u003e \u003ccommand\u003e\n```\n\nExample for R:\n\n```shell\napptainer run --writable-tmpfs ./jds2025-workshop-R.sif quarto render\n```\n\n## Environment installation (for advanced users)\n\nR\n: \n```shell\nRscript -e 'install.packages(\"renv\"); renv::restore()'\n```\n\nPython/pip\n: \n```shell\npip install -r requirements.txt\n```\n\nPython/conda (we recommend [micromamba](https://mamba.readthedocs.io/en/latest/installation/micromamba-installation.html))\n: \n```shell\nconda env create -f environment.yml\n```\n\n```shell\nquarto add computorg/computo-quarto-extension\n```","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcomputorg%2Fjds2025-workshop-template","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcomputorg%2Fjds2025-workshop-template","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcomputorg%2Fjds2025-workshop-template/lists"}