{"id":16457346,"url":"https://github.com/connectedsystems/oat-use","last_synced_at":"2025-02-27T03:14:13.578Z","repository":{"id":115502375,"uuid":"173392896","full_name":"ConnectedSystems/oat-use","owner":"ConnectedSystems","description":"Demonstration of the effectivity of OAT as a first-pass diagnostic test","archived":false,"fork":false,"pushed_at":"2020-10-05T13:46:38.000Z","size":16913,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"main","last_synced_at":"2024-10-12T10:30:23.283Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Jupyter 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Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"A use for One-At-a-Time sensitivity analysis: Diagnostic testing of integrated models\n\nCompanion code for the paper detailing the analysis approach and figure generation.\n\n\nSetup\n=======\n\nClone the necessary repositories:\n\n```bash\n$ git clone https://github.com/ConnectedSystems/oat-use.git\n$ git clone https://github.com/ConnectedSystems/SALib.git --branch radial-oat-method --single-branch salib-roat\n$ cd salib-roat\n$ git checkout da99fdaed05c29e98ab8d7685d2c6ad3783ce946\n$ cd ..\n```\n\nSet up environment from the project folder:\n\n```bash\n$ cd oat-use\n$ conda create -n oat-use python=3.6.6 -y\n$ conda activate oat-use\n$ pip install -r requirements.txt\n$ cd ..\n```\n\nInstall the specific branch of SALib used for the study:\n\n```bash\n$ cd salib-roat\n$ pip install -e .\n$ cd ..\n```\n\nSet up ipykernel with:\n\n```bash\n$ python -m ipykernel install --name oat-use --display-name \"Python (oat-use)\"\n```\n\nThe full instructions as above:\n\n```bash\n$ git clone https://github.com/ConnectedSystems/oat-use.git\n$ git clone https://github.com/ConnectedSystems/SALib.git --branch radial-oat-method --single-branch salib-roat \n$ cd salib-roat\n$ git checkout da99fdaed05c29e98ab8d7685d2c6ad3783ce946\n$ cd ..\n\n$ conda create -n oat-use python=3.6.6 -y\n$ conda activate oat-use\n$ cd oat-use\n$ pip install -r requirements.txt\n$ cd ..\n$ cd salib-roat\n$ pip install -e .\n$ cd ..\n$ python -m ipykernel install --name oat-use --display-name \"Python (oat-use)\"\n```\n\nNotebooks\n=========\n\nNotebooks are found in the `notebooks` directory and are labelled in order of use.\n\nMiscellaneous notebooks are unnumbered and are included for posterity.\n\nTo view notebooks locally, it is assumed jupyter `notebook` or `lab` is installed.\n\n```bash\npip install jupyterlab\n```\n\nOnce the `conda` environment is activated:\n\n```bash\n$ cd notebooks\n$ jupyter lab\n```\n\nScripts\n=========\n\nScripts used to generate samples are found in the `scripts` directory.\nThese are to retain a record of sample provenance and do not need to be run.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fconnectedsystems%2Foat-use","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fconnectedsystems%2Foat-use","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fconnectedsystems%2Foat-use/lists"}