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See [the documentation](https://constantinpape.github.io/elf/elf.html) for how to use elf.\n\nSee `examples` for some usage examples. For processing large data on a cluster, check out [cluster_tools](https://github.com/constantinpape/cluster_tools), which uses a lot of `elf` functionality internally.\n\nIt is used by several down-stream dependencies:\n- [cluster_tools](https://github.com/constantinpape/cluster_tools)\n- [paintera_tools](https://github.com/constantinpape/paintera_tools)\n- [pybdv](https://github.com/constantinpape/pybdv)\n- [ilastik](https://github.com/ilastik/ilastik)\n- [mobie-python](https://github.com/mobie/mobie-utils-python)\n- [plantseg](https://github.com/hci-unihd/plant-seg)\n\n## Installation\n\nInstall the package from source and in development mode via\n```\npip install -e .\n```\nor via conda\n```\nconda install -c conda-forge python-elf\n```\n\n## Functionality overview\n\n**Segmentation:** `elf` implements graph-based segmentation using the implementations of multict, lifted multicut and other graph partitioning approaches from [nifty](https://github.com/DerThorsten/nifty).\nCheck out [the examples](https://github.com/constantinpape/elf/tree/master/example/segmentation) to see how to use this functionality for segmenting your data.\n\n**Tracking:** `elf` implements graph-based tracking using the implementations from [motile](https://github.com/funkelab/motile).\nCheckout [the examples](https://github.com/constantinpape/elf/tree/master/example/tracking) to see how to use this functionality to track your data.\n\nIn order to use this functionality you will need to install `motile`. You can do this via\n```\nconda install -c conda-forge -c funkelab -c gurobi ilpy\n```\nand then\n```\npip install motile\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fconstantinpape%2Felf","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fconstantinpape%2Felf","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fconstantinpape%2Felf/lists"}