{"id":17606630,"url":"https://github.com/corybrunson/pubmed.network","last_synced_at":"2025-03-29T23:17:02.702Z","repository":{"id":26618545,"uuid":"30073924","full_name":"corybrunson/pubmed.network","owner":"corybrunson","description":"analysis of PubMed data","archived":false,"fork":false,"pushed_at":"2015-03-12T20:55:51.000Z","size":1984,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-02-05T00:41:44.616Z","etag":null,"topics":["pubmed","reproduction-code"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/corybrunson.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-01-30T13:52:40.000Z","updated_at":"2019-10-08T22:25:35.000Z","dependencies_parsed_at":"2022-08-17T17:35:12.825Z","dependency_job_id":null,"html_url":"https://github.com/corybrunson/pubmed.network","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/corybrunson%2Fpubmed.network","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/corybrunson%2Fpubmed.network/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/corybrunson%2Fpubmed.network/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/corybrunson%2Fpubmed.network/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/corybrunson","download_url":"https://codeload.github.com/corybrunson/pubmed.network/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246254148,"owners_count":20747949,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["pubmed","reproduction-code"],"created_at":"2024-10-22T15:51:41.060Z","updated_at":"2025-03-29T23:17:02.674Z","avatar_url":"https://github.com/corybrunson.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"pubmed.network\n=======\n\nThis R package contains functions for network analysis of PubMed data.\n\n## Description\n\nAn ongoing network analysis of an excerpt of the [PubMed bibliographic database] [2] makes use of the [Author-ity database] [1] to disambiguate author names. The data consolidation consists in omitting\n\n* PMIDs (PubMed publication identification numbers) from the PubMed excerpt that do not appear, or do not appear as many times as they should (once for each author), in Author-ity; and\n* PMIDs from Author-ity that do not appear in the PubMed excerpt.\n\nFurther steps will be discussed as they are performed.\n\n[1]: http://arrowsmith.psych.uic.edu/arrowsmith_uic/author2.html\n[2]: http://www.ncbi.nlm.nih.gov/pubmed/\n\n## Install\n\nThe repo is arranged as an R package and can be installed using the [devtools](http://cran.r-project.org/web/packages/devtools/index.html) package:\n\n```r\nif(!require(devtools)) {\n    install.packages('devtools')\n    stopifnot(require(devtools))\n}\ninstall_github('corybrunson/pubmed.network')\n```\n\nIf you experience any problems with the installation process (that aren't resolved by `?` and searching, e.g., [StackExchange] [3], please let me know.\n\n[3]: http://stackexchange.com/\n\n## References\n\nThe Author-ity database is credited to:\n\n* Torvik VI, Smalheiser NR. \"Author name disambiguation in MEDLINE.\" ACM Transactions on Knowledge Discovery from Data 2009; **3**(3):11.\n* Smalheiser NR, Torvik VI. \"Author name disambiguation.\" In *Annual Review of Information Science and Technology* (B. Cronin, Ed.), Vol. 43 (2009), pp. 287-313.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcorybrunson%2Fpubmed.network","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcorybrunson%2Fpubmed.network","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcorybrunson%2Fpubmed.network/lists"}