{"id":23046192,"url":"https://github.com/cpanse/koina-rclient","last_synced_at":"2026-07-02T15:35:03.828Z","repository":{"id":161458646,"uuid":"634308898","full_name":"cpanse/koina-Rclient","owner":"cpanse","description":"R lang client for koina (DLOmix) 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Rpkg client for the koina.proteomicsdb.org  service\n\n## FAQ\n\n### What is Koina?\nread: https://koina.proteomicsdb.org/\n\n### how to run the server?\n\n#### Option 1\nfollow the install:\ngithub.com:wilhelm-lab/koina.git\n\n```\ndocker compose up serving -d\ndocker compose logs serving -f\n```\n\n#### Option 2\n\nuse a public one, e.g., dlomix.fgcz.uzh.ch:8080 (using `usessl=FALSE`)\nor koina.proteomicsdb.org:443 \n\n### how to set the library path?\n\n```\n$ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HOME/src/v2.34.0dev.clients/lib/\n\n\ncpanse@fgcz-h-480:~/src/github.com/cpanse/dlomix-Rclient  (main)\u003e ldd dlomix \n        linux-vdso.so.1 (0x00007ffcbfba0000)\n        libgrpcclient.so =\u003e /home/cpanse/src/v2.34.0dev.clients/lib/libgrpcclient.so (0x00007fa98cd29000)\n        libstdc++.so.6 =\u003e /lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007fa98cb51000)\n        libgcc_s.so.1 =\u003e /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007fa98cb37000)\n        libc.so.6 =\u003e /lib/x86_64-linux-gnu/libc.so.6 (0x00007fa98c962000)\n        libz.so.1 =\u003e /lib/x86_64-linux-gnu/libz.so.1 (0x00007fa98c945000)\n        libssl.so.1.1 =\u003e /lib/x86_64-linux-gnu/libssl.so.1.1 (0x00007fa98c8b2000)\n        libcrypto.so.1.1 =\u003e /lib/x86_64-linux-gnu/libcrypto.so.1.1 (0x00007fa98c5bb000)\n        libpthread.so.0 =\u003e /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007fa98c599000)\n        libm.so.6 =\u003e /lib/x86_64-linux-gnu/libm.so.6 (0x00007fa98c455000)\n        /lib64/ld-linux-x86-64.so.2 (0x00007fa98d654000)\n        libdl.so.2 =\u003e /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fa98c44f000)\n\n```\nsee also [INSTALL](INSTALL)\n\n### how to set the right data type?\n\nhttps://github.com/triton-inference-server/server/blob/main/docs/user_guide/model_configuration.md\n\n\n### how to get the Rcpp example to work?\n\n```\n#R\n\n##  otherwise the library can not resolve all entries!\nSys.setenv(\"PKG_CXXFLAGS\"=\"-I/home/cpanse/src/v2.34.0dev.clients/include/ -Wall -pedantic -std=c++17 -O3\")\nSys.setenv(\"PKG_LIBS\"=\"-L /home/cpanse/src/v2.34.0dev.clients/lib/ -lgrpcclient\")\n\nRcpp::sourceCpp(\"src/rcpp_alphapept.cpp \", verbose = TRUE, rebuild = TRUE, cacheDir = \"dlomixRcpp\")\n## call \nout \u003c- dlomix_AlphaPept_ms2_generic_ensemble(\"ELVISK\")\n```\nof note, this section is outdated\n\n## links\n\n- https://github.com/eubic/EuBIC2023/issues/12\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcpanse%2Fkoina-rclient","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcpanse%2Fkoina-rclient","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcpanse%2Fkoina-rclient/lists"}