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Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics\n\n## Documentation\n\nThe package ships with two pdf vignettes.\n\n```\nbrowseVignettes('protViz')\n\nvignette('protViz')\nvignette('PTM_MarkerFinder')\n```\n\n## Installation\n\n### CRAN\n\n```\ninstall.packages('protViz')\n```\n\n\n### from [github](https://github.com/cpanse/protViz)\n\ninstall the latest development version\n\n```{r}\ninstall.packages('devtools')\nlibrary(devtools)\ninstall_git('https://github.com/cpanse/protViz', build_vignettes = FALSE, quiet = FALSE)\nlibrary(protViz)\n```\n\nor\n\n```{r}\nBiocManager::install('cpanse/protViz')\n```\n\n### R CMD build hints\n\n\n```{r}\nRcpp::compileAttributes()\n\ntools::package_native_routine_registration_skeleton(\".\", character_only = FALSE)\n\n\nRcppExport SEXP _rcpp_module_boot_MyModule();\n\nstatic const R_CallMethodDef CallEntries[] = {\n    {\"_rcpp_module_boot_MyModule\", (DL_FUNC) \u0026_rcpp_module_boot_MyModule, 0},\n    {NULL, NULL, 0}\n};\n\nRcppExport void R_init_minModuleEx(DllInfo *dll) {\n    R_registerRoutines(dll, NULL, CallEntries, NULL, NULL);\n    R_useDynamicSymbols(dll, FALSE);\n}\n\n```\n\n### Docker\n\n```\ndocker pull cpanse/protviz \\\n\u0026\u0026 docker run -d -p 8792:8787 cpanse/protviz     \n```\n\nconnect to http://yourdockerhost:8791  using a web browser\n\n* username: rstudio\n* password: rstudio\n\n\n## Documentation\n\nThe package ships with a package vignette (browseVignettes('protViz') and a reference manual (just type ?protViz on the R shell).\n\nBoth documents are also available on the [package's CRAN](https://CRAN.R-project.org/package=protViz) page.\n\n\n## Related approaches\n\n* [RforProteomics](https://bioconductor.org/packages/RforProteomics/)\n* [Spectra](https://github.com/rformassspectrometry/Spectra)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcpanse%2Fprotviz","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcpanse%2Fprotviz","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcpanse%2Fprotviz/lists"}