{"id":34944735,"url":"https://github.com/crsl4/methods-bio-data-workshop","last_synced_at":"2026-03-18T00:48:08.626Z","repository":{"id":220164122,"uuid":"750921954","full_name":"crsl4/methods-bio-data-workshop","owner":"crsl4","description":"Methods for Biological Data Workshop (UW-Madison)","archived":false,"fork":false,"pushed_at":"2024-12-01T14:57:07.000Z","size":6278,"stargazers_count":3,"open_issues_count":0,"forks_count":2,"subscribers_count":2,"default_branch":"main","last_synced_at":"2024-12-01T15:36:44.108Z","etag":null,"topics":["bioinformatics","computational-biology","data-science"],"latest_commit_sha":null,"homepage":"https://crsl4.github.io/methods-bio-data-workshop/","language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/crsl4.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-01-31T15:33:42.000Z","updated_at":"2024-12-01T14:57:11.000Z","dependencies_parsed_at":"2024-04-05T03:30:17.716Z","dependency_job_id":"e7faf157-e742-44e5-bf9f-ff724bc072b5","html_url":"https://github.com/crsl4/methods-bio-data-workshop","commit_stats":{"total_commits":13,"total_committers":3,"mean_commits":4.333333333333333,"dds":"0.23076923076923073","last_synced_commit":"dc2902e643135f1cd0ed8c90174d4c2c7b22cae5"},"previous_names":["crsl4/methods-bio-data-workshop"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/crsl4/methods-bio-data-workshop","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/crsl4%2Fmethods-bio-data-workshop","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/crsl4%2Fmethods-bio-data-workshop/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/crsl4%2Fmethods-bio-data-workshop/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/crsl4%2Fmethods-bio-data-workshop/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/crsl4","download_url":"https://codeload.github.com/crsl4/methods-bio-data-workshop/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/crsl4%2Fmethods-bio-data-workshop/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30637748,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-18T00:09:27.587Z","status":"ssl_error","status_checked_at":"2026-03-18T00:09:26.123Z","response_time":56,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","computational-biology","data-science"],"created_at":"2025-12-26T19:54:02.131Z","updated_at":"2026-03-18T00:48:08.612Z","avatar_url":"https://github.com/crsl4.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# Methods for Biological Data Workshop\n\nThis website will host the materials for the \"Methods for Biological Data\" Workshop.\n\n## Schedule Fall 2024\n\nThe workshop in Fall 2024 will take place in Russell 584 the first Thursday of every month 1-2:30pm (except September).\n\n| Date | Speaker | Title | Lecture notes |\n| :---:   | :---: | :---:       |\n| October 3 | [Christina Koch](https://wid.wisc.edu/people/christina-koch/) | Advance your research: scale out your computing with [CHTC](https://chtc.cs.wisc.edu/) | [slides](https://docs.google.com/presentation/d/1L6elI8Npk5Eor-t-hvaJ7RI7q-54M8hVJCZ4AetWl84/edit?usp=sharing), [recording](https://youtu.be/AOYOD8F_Ygs) |\n| November 7 | [Jacob Steenwyk](https://jlsteenwyk.com/) | Colorblind-friendly and publication-quality data visualization in R | [resources](https://jlsteenwyk.com/resources.html), [recording](https://youtu.be/9ExOjVe7N4o) | \n\n\n## Schedule Spring 2024\n\nThe workshop in Spring 2024 will take place in Russell 584 the first Wednesday of every month 2-3:30pm.\n\n| Date | Speaker | Title | Lecture notes |\n| :---:   | :---: | :---:       |\n| February 7 | [Kris Sankaran](https://krisrs1128.github.io/LSLab/) | Simulation in Omics | [slides](https://go.wisc.edu/v4hsh9), [notebook](https://colab.research.google.com/drive/1IyMEQJwkslPzL9FYd5atvyGORqW9IrCI?usp=sharing) | \n| March 6 | [Toby Baril](https://tobybaril.github.io) | Annotating Transposable Elements with Earl Grey: A Beginner's Guide | [slides](./sources/uwMadisonWorkshopEarlGrey_participantCopy.pptx), [recording](https://www.youtube.com/watch?v=D4GBld4X4kg) |\n| April 3 | [Amy Willis](https://statdivlab.github.io/) | Meaningful comparisons of abundance based on high-throughput sequencing data | [slides](https://drive.google.com/file/d/1wBmpoHzVuMK90HP7K9zx6VH-8XtUXLo7/view?usp=sharing), [radEmu github](https://github.com/statdivlab/radEmu), [r script](https://drive.google.com/file/d/1-81vbFoxBd8NK1q33EMOWBDyyA8WrnoD/view), [recording](https://youtu.be/gIFJpU_QvmA) |\n| May 1 | [Zachary Konkel](https://www.linkedin.com/in/konkelzach/) | Democratizing genomics with Mycotools | [mycotools gitlab](https://gitlab.com/xonq/mycotools), [mycotools workshop content](https://github.com/xonq/mycotools/blob/master/test/mycotools_workshop.md), [recording](https://www.youtube.com/watch?v=5FVbRDy-nBU)|\n\n\n## Meet the organizers\n\nOriginally from Mexico City, Claudia Sol\u0026iacute;s-Lemus is an assistant professor at the [Wisconsin Institute for Discovery](https://wid.wisc.edu/) and the [Department of Plant Pathology](https://plantpath.wisc.edu/) at the [University of Wisconsin-Madison](http://www.wisc.edu). \n\n\u003cdiv class=\"container\"\u003e\n    \u003cdiv class=\"row\"\u003e\n        \u003cdiv class=\"column\"\u003e\n            \u003ca href=\"pics/claudiaSmall1.png\"\u003e\n            \u003cimg src=\"https://crsl4.github.io/methods-bio-data-workshop//pics/claudiaSmall1.png\" width=\"150\"\n                  title=\"Claudia Sol\u0026iacute;s-Lemus\"/\u003e\u003c/a\u003e\n        \u003c/div\u003e\n        \u003cdiv class=\"column\"\u003e\n            Pronouns: she/her \u003cbr/\u003e\n            \u003ca href=\"https://namedrop.io/claudiasolislemus\"\u003eName pronunciation\u003c/a\u003e\u003cbr/\u003e\n            \u003ca href=\"https://solislemuslab.github.io/\"\u003eLab website\u003c/a\u003e\u003cbr/\u003e\n            \u003ca href=\"https://scholar.google.com/citations?user=GrUypj8AAAAJ\u0026hl=en\u0026oi=ao\"\u003eGoogle scholar\u003c/a\u003e\u003cbr/\u003e\n            \u003ca href=\"https://github.com/crsl4\"\u003eGitHub\u003c/a\u003e\u003cbr/\u003e\n            \u003ca href=\"https://solislemuslab.github.io//pages/people.html\"\u003eContact Info\u003c/a\u003e\u003cbr/\u003e\n        \u003c/div\u003e\n    \u003c/div\u003e\n\u003c/div\u003e\n\u003cbr\u003e\nBorn and raised in Montreal, Emile Gluck-Thaler is an assistant professor in the \u003ca href=\"https://plantpath.wisc.edu/\"\u003eDepartment of Plant Pathology\u003c/a\u003e at the \u003ca href=\"http://www.wisc.edu\"\u003eUniversity of Wisconsin-Madison\u003c/a\u003e and a Discovery Fellow at the \u003ca href=\"https://wid.wisc.edu/\"\u003eWisconsin Institute for Discovery\u003c/a\u003e. \n\n\n\u003cdiv class=\"container\"\u003e\n    \u003cdiv class=\"row\"\u003e\n        \u003cdiv class=\"column\"\u003e\n            \u003ca href=\"pics/Gluck-Thaler_1_square.jpg\"\u003e\n               \u003cimg src=\"https://crsl4.github.io/methods-bio-data-workshop//pics/Gluck-Thaler_1_square.jpg\" width=\"150\"\n                  title=\"Emile Gluck-Thaler\" alt=\"Emile Gluck.Thaler\"/\u003e\u003c/a\u003e\n        \u003c/div\u003e\n        \u003cdiv class=\"column\"\u003e\n            Pronouns: he/him \u003cbr/\u003e\n            \u003ca href=\"https://plantpath.wisc.edu/faculty/emile-gluck-thaler/\"\u003eFaculty website\u003c/a\u003e\u003cbr/\u003e\n            \u003ca href=\"https://scholar.google.com/citations?user=0CQpHksAAAAJ\u0026hl=en\"\u003eGoogle scholar\u003c/a\u003e\u003cbr/\u003e\n            \u003ca href=\"https://github.com/egluckthaler\"\u003eGitHub\u003c/a\u003e\u003cbr/\u003e\n        \u003c/div\u003e\n    \u003c/div\u003e\n\u003c/div\u003e\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcrsl4%2Fmethods-bio-data-workshop","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcrsl4%2Fmethods-bio-data-workshop","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcrsl4%2Fmethods-bio-data-workshop/lists"}