{"id":20949359,"url":"https://github.com/csiro-enviro-informatics/loci-integration-api","last_synced_at":"2025-03-13T05:15:50.552Z","repository":{"id":47535530,"uuid":"209311606","full_name":"CSIRO-enviro-informatics/loci-integration-api","owner":"CSIRO-enviro-informatics","description":"This application provides a convenient interface for executing common functions across the whole LOCI system.","archived":false,"fork":false,"pushed_at":"2021-08-25T00:07:27.000Z","size":205,"stargazers_count":0,"open_issues_count":12,"forks_count":3,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-01-19T22:26:38.560Z","etag":null,"topics":["api","loci","rest","rest-api","restful","sanic","sanic-restplus"],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/CSIRO-enviro-informatics.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2019-09-18T13:10:50.000Z","updated_at":"2021-03-05T03:43:54.000Z","dependencies_parsed_at":"2022-09-23T23:34:03.291Z","dependency_job_id":null,"html_url":"https://github.com/CSIRO-enviro-informatics/loci-integration-api","commit_stats":null,"previous_names":[],"tags_count":8,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CSIRO-enviro-informatics%2Floci-integration-api","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CSIRO-enviro-informatics%2Floci-integration-api/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CSIRO-enviro-informatics%2Floci-integration-api/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CSIRO-enviro-informatics%2Floci-integration-api/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CSIRO-enviro-informatics","download_url":"https://codeload.github.com/CSIRO-enviro-informatics/loci-integration-api/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":243345615,"owners_count":20275872,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["api","loci","rest","rest-api","restful","sanic","sanic-restplus"],"created_at":"2024-11-19T00:35:40.977Z","updated_at":"2025-03-13T05:15:50.531Z","avatar_url":"https://github.com/CSIRO-enviro-informatics.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# LOCI Integration API\n\n## Description\nThis application provides a convenient interface for executing common functions across the whole LOCI system.\n\n## Implementation\nUses Sanic Asynchronous HTTP Service with the Sanic-Restplus plugin to generate API endpoint, and to auto-document the SwaggerUI.\n\n## Run\n\ndocker-compose is included for an containerized local deployment\n\n## Test/Develop\n\nrun `docker-compose -f docker-compose.yml -f docker-compose.dev.yml up --build` to build in dev model and run a container for running tests or development\n\nif running the label search engine, run\n`docker-compose -f docker-compose.yml -f docker-compose.dev.yml -f docker-compose.es.yml up --build` \n\nif running the label search engine only (no sanic api),\n`docker-compose -f docker-compose.es.yml up --build` \n\nif running the api with docker image from docker hub\n`docker-compose -f docker-compose.yml -f docker-compose.useimage.yml up -d` \n\n\n## Known issues\n\nIf running the elasticsearch appliance throws up an error like:\n```\ninitial heap size [2685456] not equal to maximum heap size [2147483648]; this can cause resize pauses and prevents mlockall from locking the entire heap\n```\n\nEnsure this is updated on the OS like so...\n```\n$ sudo sysctl -w vm.max_map_count=262144\n\n```\n\n## License\nThe license of this document is TBD\n\n## Contacts\nProject Technical Lead:  \n**Jonathan Yu**  \n*Senior Experimental Scientist*  \nCSIRO Land \u0026 Water\n\u003cjonathan.yu@csiro.au\u003e  \n\u003chttp://orcid.org/0000-0002-2237-0091\u003e\n\nLead Developer:  \n**Ashley Sommer**  \n*Software Engineer*  \nCSIRO Land \u0026 Water\n\u003cashley.sommer@csiro.au\u003e  \n\u003chttp://orcid.org/0000-0003-0590-0131\u003e\n\nDeveloper:  \n**Ben Leighton**  \n*Software Engineer*  \nCSIRO Land \u0026 Water\n\u003cben.leighton@csiro.au\u003e  \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcsiro-enviro-informatics%2Floci-integration-api","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcsiro-enviro-informatics%2Floci-integration-api","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcsiro-enviro-informatics%2Floci-integration-api/lists"}