{"id":16476940,"url":"https://github.com/cssfrancis/4d_stem_clustering","last_synced_at":"2026-06-09T06:31:11.560Z","repository":{"id":218579484,"uuid":"743724097","full_name":"CSSFrancis/4d_stem_clustering","owner":"CSSFrancis","description":"Code for \"Clustering Diffraction Vectors from Overlapping Structures in 4D STEM Data Sets\"","archived":false,"fork":false,"pushed_at":"2024-01-22T18:34:29.000Z","size":2590,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-02-28T17:43:35.760Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/CSSFrancis.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2024-01-15T21:07:17.000Z","updated_at":"2024-01-22T18:33:11.000Z","dependencies_parsed_at":"2024-01-22T22:56:03.735Z","dependency_job_id":null,"html_url":"https://github.com/CSSFrancis/4d_stem_clustering","commit_stats":null,"previous_names":["cssfrancis/4d_stem_clustering"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/CSSFrancis/4d_stem_clustering","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CSSFrancis%2F4d_stem_clustering","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CSSFrancis%2F4d_stem_clustering/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CSSFrancis%2F4d_stem_clustering/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CSSFrancis%2F4d_stem_clustering/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CSSFrancis","download_url":"https://codeload.github.com/CSSFrancis/4d_stem_clustering/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CSSFrancis%2F4d_stem_clustering/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34095242,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-09T02:00:06.510Z","response_time":63,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-11T12:44:00.750Z","updated_at":"2026-06-09T06:31:11.544Z","avatar_url":"https://github.com/CSSFrancis.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"Clustering Diffraction Vectors from Overlapping Structures in 4D STEM Data Sets\n===============================================================================\n\nCarter Francis| csfrancis@wisc.edu\n\nThis repository contains all of the code to reproduce the results in the paper\n\n\u003e Insert citation here\n\nThis github repository also has a Zenodo DOI for completeness sake an\n\nThe code is organized into three main folders:\n\n1. toy_models:\n    - Data generation for the toy models using a Al.cif and the diffsims (version 0.6.0) package\n    - Clustering of the toy models using the pyxem package (version 0.17.0 or greater)\n2. al_nano_crystals:\n    - Clustering of the (real) Al nano-crystals using the pyxem package (version 0.17.0 or greater)\n3. pdcusi_glass_structure:\n    - Clustering of the (real) PdCuSi glass structure using the pyxem package (version 0.17.0 or greater)\n    - Discussion about how the structure was determined as well as some potential drawbacks of the method\n\nThe data for the toy models is self contained and generated using the data_generation notebook. That data for the\nal_nano_crystals and pdcusi_glass_structure is too large to be stored on github and must be downloaded separately.\n\nThe data for the al_nano_crystals can be downloaded from:\n\n\u003e https://acdc.alcf.anl.gov/mdf/detail/4dclustering_v1.1/\n\nThe data for the pdcusi_glass_structure can be downloaded from:\n\n\u003e https://acdc.alcf.anl.gov/mdf/detail/4dclustering_v1.1/\n\nSmaller (perhaps more useful) versions of this data processing can be found in the pyxem documentation and\nwill easily run on a laptop.\n\n\u003e Small example for Glass Symmetry Analysis\n\n\u003e Small example for Nano-Crystal Segmentation Analysis\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcssfrancis%2F4d_stem_clustering","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcssfrancis%2F4d_stem_clustering","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcssfrancis%2F4d_stem_clustering/lists"}