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sourmash_plugin_abundhist\n\n## Installation\n\n```\npip install sourmash_plugin_abundhist\n```\n\n## Usage\n\n### Example\n\n\n#### Basic command-line usage:\n```\n% sourmash scripts abundhist examples/SRR606249-abund-100k.sig.zip\n\n== This is sourmash version 4.8.3.dev0. ==\n== Please cite Brown and Irber (2016), doi:10.21105/joss.00027. ==\n\nloaded 1 total that matched ksize \u0026 molecule type\n\n36   [3487]  ****************************************\n72   [ 485]  ******\n107  [ 171]  **\n143  [  38]  *\n178  [   5]\n214  [   3]\n249  [   7]  *\n285  [   0]\n320  [   2]\n356  [   2]\n```\n\n#### Create a nice histogram figure for an isolate reads data set\n\n```\nsourmash scripts abundhist --max 100 --min 1 --bins 100 examples/reads.sig.gz --figure examples/ecoli-reads.png --ymax=200\n```\n\nwill create:\n\n![histogram](examples/ecoli-reads.png)\n\n#### Create a nice histogram figure for a metagenome:\n\n```\n% sourmash scripts abundhist examples/SRR606249-abund-100k.sig.zip --figure hist.png\n```\nwill create this figure:\n\n![histogram](examples/hist.png)\n\n## Support\n\nWe suggest filing issues in [the main sourmash issue tracker](https://github.com/dib-lab/sourmash/issues) as that receives more attention!\n\n## Dev docs\n\n`abundhist` is developed at https://github.com/ctb/sourmash_plugin_abundhist.\n\n### Testing\n\nRun:\n```\npytest tests\n```\n\n### Generating a release\n\nBump version number in `pyproject.toml` and push.\n\nMake a new release on github.\n\nThen pull, and:\n\n```\npython -m build\n```\n\nfollowed by `twine upload dist/...`.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fctb%2Fsourmash_plugin_abundhist","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fctb%2Fsourmash_plugin_abundhist","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fctb%2Fsourmash_plugin_abundhist/lists"}