{"id":32611503,"url":"https://github.com/ctlab/hict_webui","last_synced_at":"2025-10-30T13:59:28.688Z","repository":{"id":65029748,"uuid":"499890393","full_name":"ctlab/HiCT_WebUI","owner":"ctlab","description":null,"archived":false,"fork":false,"pushed_at":"2024-04-13T18:02:18.000Z","size":1229,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2024-04-14T03:40:21.982Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"TypeScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ctlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2022-06-04T17:15:42.000Z","updated_at":"2024-04-17T21:33:54.241Z","dependencies_parsed_at":"2023-10-12T07:17:57.726Z","dependency_job_id":"e88a2295-8d5b-4c3c-9264-23694b7dfef6","html_url":"https://github.com/ctlab/HiCT_WebUI","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/ctlab/HiCT_WebUI","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ctlab%2FHiCT_WebUI","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ctlab%2FHiCT_WebUI/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ctlab%2FHiCT_WebUI/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ctlab%2FHiCT_WebUI/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ctlab","download_url":"https://codeload.github.com/ctlab/HiCT_WebUI/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ctlab%2FHiCT_WebUI/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":281818072,"owners_count":26566859,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-30T02:00:06.501Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-10-30T13:58:37.199Z","updated_at":"2025-10-30T13:59:28.674Z","avatar_url":"https://github.com/ctlab.png","language":"TypeScript","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Hi-CT_WebUI -- Web-based UI for HiCT interactive manual scaffolding tool\n\nFor more info about HiCT, please visit [HiCT repo page](https://github.com/ctlab/HiCT).\n\n## Overview\nThis repo contains sources for HiCT web-based user interface made with Vue3 and Bootstrap, packaged with Electron.\nVisit [releases page](https://github.com/ctlab/HiCT_WebUI/releases) to obtain binaries for your operating system.\n\n### Supported features:\n* Opening of HiCT contact map files;\n* Drag/pan/zoom of contact map overview;\n* Contig range selection using Shift+Drag or single click;\n* Reverse and translocation of contig selection range;\n* Grouping contig selection range into scaffold and ungrouping scaffolds;\n* Linking FASTA for assembly;\n* Export of FASTA for assembly;\n* Export FASTA context of assembly for the selected region;\n* Import of AGP assembly description files (only without split contigs).\n\n## Operation instructions:\nMake [HiCT server](https://github.com/ctlab/HiCT_Server) available at `http://localhost:5000` either by starting it locally or by using port forwarding from remote server. Put HiCT files into server's data directory (you can convert Coolers using [HiCT_Utils](https://github.com/ctlab/HiCT_Utils)). Start Electron-based Web UI by unzipping binary distribution and launching `.exe` file (Windows) or by launching `.AppImage` file (linux, make sure you've made `chmod +x` for it). \nClick File -\u003e Open and select HiCT file you want to interact with. Tiles should start loading on a contact map. Use single clicks or Shift+dragging at any time to perform range selection. Click tool buttons on the left side to perform actions with selection range.\nAfter you've done, you can either save state using File -\u003e Save in HiCT format, or export assembly info using Assembly menu in navigation bar at the top of the window.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fctlab%2Fhict_webui","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fctlab%2Fhict_webui","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fctlab%2Fhict_webui/lists"}