{"id":32611491,"url":"https://github.com/ctlab/mcmcranking","last_synced_at":"2025-10-30T13:59:19.530Z","repository":{"id":55564621,"uuid":"110971923","full_name":"ctlab/mcmcRanking","owner":"ctlab","description":"Tool To Solve The Active Module Problem","archived":false,"fork":false,"pushed_at":"2020-12-21T20:53:06.000Z","size":517,"stargazers_count":5,"open_issues_count":0,"forks_count":4,"subscribers_count":5,"default_branch":"master","last_synced_at":"2024-05-19T00:08:56.041Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ctlab.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-11-16T13:00:16.000Z","updated_at":"2023-04-23T11:35:46.000Z","dependencies_parsed_at":"2022-08-15T03:20:14.724Z","dependency_job_id":null,"html_url":"https://github.com/ctlab/mcmcRanking","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/ctlab/mcmcRanking","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ctlab%2FmcmcRanking","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ctlab%2FmcmcRanking/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ctlab%2FmcmcRanking/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ctlab%2FmcmcRanking/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ctlab","download_url":"https://codeload.github.com/ctlab/mcmcRanking/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ctlab%2FmcmcRanking/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":281818072,"owners_count":26566859,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-30T02:00:06.501Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-10-30T13:58:24.450Z","updated_at":"2025-10-30T13:59:19.523Z","avatar_url":"https://github.com/ctlab.png","language":"C++","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, echo = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"README-\"\n)\n```\n\n# mcmcRanking\n\n[![Travis-CI Build Status](https://travis-ci.org/ctlab/mcmcRanking.svg?branch=master)](https://travis-ci.org/ctlab/mcmcRanking)\n[![AppVeyor Build Status](https://ci.appveyor.com/api/projects/status/github/ctlab/mcmcRanking?branch=master\u0026svg=true)](https://ci.appveyor.com/project/ctlab/mcmcRanking)\n[![Coverage status](https://codecov.io/gh/ctlab/mcmcRanking/branch/master/graph/badge.svg)](https://codecov.io/github/ctlab/mcmcRanking?branch=master)\n\n\n## Overview\nTool for estimate probabilities of vertices being in active module using its likelihoods and it proposes methods for ranking vertices in order of importance. Estimating probabilities  based on Markov chain Monte Carlo (MCMC) methods.\n\n## Installation\n\nYou can install mcmcRanking from github with:\n\n```{r gh-installation, eval = FALSE}\n# install.packages(\"devtools\")\ndevtools::install_github(\"ctlab/mcmcRanking\")\n```\n\n\n## Illustration\n\nAn animation of the MCMC algorithm performing. Vertices are colored depending on its likelihood, burgundy and gray colors corresponds to high and low likelihoods respectively. Yellow subgraph is an active module.\n\n\u003ca href=\"https://gist.github.com/javlon/36d0ade4be626a3fbb8cc34ee1ac1d69\"\u003e\u003cimg src=\"https://gist.githubusercontent.com/javlon/36d0ade4be626a3fbb8cc34ee1ac1d69/raw/836b53ae53e1d7f61cdc2bd119f0698c8a50ddf1/mcmc_sample.gif\" width=\"630\" height=\"630\"/\u003e\u003c/a\u003e\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fctlab%2Fmcmcranking","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fctlab%2Fmcmcranking","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fctlab%2Fmcmcranking/lists"}