{"id":21845346,"url":"https://github.com/cumbof/metasbt","last_synced_at":"2025-08-19T15:07:17.372Z","repository":{"id":43425375,"uuid":"488401132","full_name":"cumbof/MetaSBT","owner":"cumbof","description":"A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees","archived":false,"fork":false,"pushed_at":"2025-07-07T19:25:30.000Z","size":821,"stargazers_count":9,"open_issues_count":0,"forks_count":3,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-07-07T20:58:33.993Z","etag":null,"topics":["bioinformatics","genomes","metagenome-assembled-genomes","metagenomics","microbial-genomics","sequence-bloom-trees"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cumbof.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-05-04T00:14:32.000Z","updated_at":"2025-07-07T19:25:34.000Z","dependencies_parsed_at":"2024-04-23T00:25:51.018Z","dependency_job_id":"9b273e93-fcfa-4d34-b6c4-268d5da9d805","html_url":"https://github.com/cumbof/MetaSBT","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/cumbof/MetaSBT","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FMetaSBT","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FMetaSBT/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FMetaSBT/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FMetaSBT/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cumbof","download_url":"https://codeload.github.com/cumbof/MetaSBT/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FMetaSBT/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271173299,"owners_count":24711667,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-19T02:00:09.176Z","response_time":63,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","genomes","metagenome-assembled-genomes","metagenomics","microbial-genomics","sequence-bloom-trees"],"created_at":"2024-11-27T23:09:36.912Z","updated_at":"2025-08-19T15:07:17.364Z","avatar_url":"https://github.com/cumbof.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# MetaSBT\n\nMetaSBT is a scalable framework designed to automatically index microbial genomes and accurately characterize metagenome-assembled genomes using Sequence Bloom Trees.\n\n👉 Get started with MetaSBT by visiting our [official wiki](https://github.com/cumbof/MetaSBT/wiki).\n\nWe also maintain a collection of public databases built with MetaSBT from curated sets of microbial genomes. You can explore and use them from the [MetaSBT-DBs](https://github.com/cumbof/MetaSBT-DBs) repository.\n\n\u003e [!NOTE]\n\u003e Interested in using MetaSBT or our databases, or building your own private database but lack the necessary computational resources?\n\u003e Reach out to us! We’re always open to collaborations.\n\n## 📖 Credits\n\nIf you use MetaSBT in your work, please cite:\n\n\u003e _Manuscript in preparation_\n\n## 🤝 Contributing\n\nLong-term discussion and bug reports are maintained via GitHub [Discussions](https://github.com/cumbof/MetaSBT/discussions) and [Issues](https://github.com/cumbof/MetaSBT/issues), while code review is managed via GitHub [Pull Requests](https://github.com/cumbof/MetaSBT/pulls).\n\nBefore contributing, please:\n1. Check for existing issues or PRs related to your topic;\n2. Write clear and concise titles and descriptions;\n3. Include steps to reproduce bugs, relevant logs, version info, and other technical details when appropriate.\n\n## 🛠️ Support\n\nNeed help?\n\nOpen an [Issue](https://github.com/cumbof/MetaSBT/issues) or start a [Discussion](https://github.com/cumbof/MetaSBT/discussions) — we're happy to assist with any questions or technical problems.\n\nCopyright © 2025 [Fabio Cumbo](https://github.com/cumbof), [Daniel Blankenberg](https://github.com/blankenberg). See [LICENSE](https://github.com/cumbof/MetaSBT/blob/main/LICENSE) for additional details.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcumbof%2Fmetasbt","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcumbof%2Fmetasbt","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcumbof%2Fmetasbt/lists"}