{"id":15724065,"url":"https://github.com/cumbof/metasbt-dbs","last_synced_at":"2026-03-15T21:39:37.666Z","repository":{"id":220835191,"uuid":"610875721","full_name":"cumbof/MetaSBT-DBs","owner":"cumbof","description":"MetaSBT public databases","archived":false,"fork":false,"pushed_at":"2025-06-11T21:42:18.000Z","size":8321,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-06-11T22:41:34.703Z","etag":null,"topics":["databases","metagenome-assembled-genomes","metagenomics","reference-genomes","sequence-bloom-trees"],"latest_commit_sha":null,"homepage":"","language":null,"has_issues":false,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cumbof.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-03-07T16:53:32.000Z","updated_at":"2025-06-11T21:42:21.000Z","dependencies_parsed_at":"2024-02-04T18:49:59.949Z","dependency_job_id":"9acee217-9b89-4b50-8a6e-4d018e91c612","html_url":"https://github.com/cumbof/MetaSBT-DBs","commit_stats":null,"previous_names":["cumbof/metasbt-dbs"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/cumbof/MetaSBT-DBs","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FMetaSBT-DBs","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FMetaSBT-DBs/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FMetaSBT-DBs/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FMetaSBT-DBs/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cumbof","download_url":"https://codeload.github.com/cumbof/MetaSBT-DBs/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FMetaSBT-DBs/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":260901210,"owners_count":23079725,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["databases","metagenome-assembled-genomes","metagenomics","reference-genomes","sequence-bloom-trees"],"created_at":"2024-10-03T22:14:31.276Z","updated_at":"2026-03-15T21:39:37.660Z","avatar_url":"https://github.com/cumbof.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# MetaSBT Public Databases\n\n📦 A collection of public MetaSBT databases featuring taxonomically organized Sequence Bloom Trees (SBTs) built from curated sets of microbial genomes.\n\n## 🧬 About the Databases\n\nThese databases are generated using the [MetaSBT framework](https://github.com/cumbof/MetaSBT).\n\nEach MetaSBT database is a compressed tarball containing Bloom filter representations of microbial genomes, hierarchically organized into SBTs based on their taxonomic information.\n\nTo simplify their distribution and installation, MetaSBT provides automated utilities.\n\n📦 [pack](https://github.com/cumbof/MetaSBT/wiki/Available-features#4-pack-pack-a-database-into-a-compressed-tarball): package a database\n\n📂 [unpack](https://github.com/cumbof/MetaSBT/wiki/Available-features#9-unpack-install-a-database): install a packaged database\n\n👉 For detailed usage instructions, and to retrieve the latest list of available public databases, refer to the [MetaSBT documentation](https://github.com/cumbof/MetaSBT/wiki/Available-features).\n\n\u003e [!NOTE]\n\u003e Want to use our software and databases, or build a private MetaSBT database but don’t have the necessary compute resources?\n\u003e Reach out! We’re always happy to collaborate.\n\n## 🤝 Contributing\n\nLong-term discussion and bug reports are maintained via GitHub [Discussions](https://github.com/cumbof/MetaSBT/discussions) and [Issues](https://github.com/cumbof/MetaSBT/issues) under the [MetaSBT framework repository](https://github.com/cumbof/MetaSBT), while code review is managed via GitHub [Pull Requests](https://github.com/cumbof/MetaSBT/pulls).\n\nBefore contributing, please:\n1. Check for existing issues or PRs related to your topic;\n2. Write clear and concise titles and descriptions;\n3. Include steps to reproduce bugs, relevant logs, version info, and other technical details when appropriate.\n\n## 🛠️ Support\n\nNeed help?\n\nOpen an [Issue](https://github.com/cumbof/MetaSBT/issues) or start a [Discussion](https://github.com/cumbof/MetaSBT/discussions) under the [MetaSBT framework repository](https://github.com/cumbof/MetaSBT) — we're happy to assist with any questions or technical problems.\n\nCopyright © 2025 [Fabio Cumbo](https://github.com/cumbof), [Daniel Blankenberg](https://github.com/blankenberg). See [LICENSE](https://github.com/cumbof/MetaSBT-DBs/blob/main/LICENSE) for additional details.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcumbof%2Fmetasbt-dbs","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcumbof%2Fmetasbt-dbs","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcumbof%2Fmetasbt-dbs/lists"}