{"id":15663307,"url":"https://github.com/cuuupid/parkinsons-ai","last_synced_at":"2025-05-05T23:21:37.851Z","repository":{"id":53903884,"uuid":"128006962","full_name":"cuuupid/parkinsons-AI","owner":"cuuupid","description":"Detect Parkinsons using XGBoost and NN's, see Medium article for in-depth","archived":false,"fork":false,"pushed_at":"2023-06-09T07:39:54.000Z","size":391,"stargazers_count":24,"open_issues_count":1,"forks_count":19,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-04-19T12:13:54.782Z","etag":null,"topics":["dataset","jupyter","machine-learning","parkinson","parkinsons-detection","xgboost"],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cuuupid.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2018-04-04T04:29:27.000Z","updated_at":"2025-04-12T23:34:41.000Z","dependencies_parsed_at":"2025-04-20T12:01:05.462Z","dependency_job_id":null,"html_url":"https://github.com/cuuupid/parkinsons-AI","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cuuupid%2Fparkinsons-AI","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cuuupid%2Fparkinsons-AI/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cuuupid%2Fparkinsons-AI/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cuuupid%2Fparkinsons-AI/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cuuupid","download_url":"https://codeload.github.com/cuuupid/parkinsons-AI/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":252591050,"owners_count":21773015,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["dataset","jupyter","machine-learning","parkinson","parkinsons-detection","xgboost"],"created_at":"2024-10-03T13:36:34.141Z","updated_at":"2025-05-05T23:21:37.830Z","avatar_url":"https://github.com/cuuupid.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Detecting Parkinsons with ML\n[![Open Word-Level In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/pshah123/parkinsons-AI/blob/master/Train.ipynb)\n\nWe'll use the data from UC Irvine's amazing dataset repository, specifically the [Parkinsons ML database](https://archive.ics.uci.edu/ml/machine-learning-databases/parkinsons/).\n\nThere are two datasets within this. The first is in the root folder (`parkinsons.data` which is included here too) and can be used to detect Parkinsons. The second is within the `telemonitoring/` directory and contains UDPR scores for us to predict.\n\n## Approach\n\nParkinsons detection islikely best done with an XGBoost since outputs are 0 or 1 and it seems mostly linear.\n\nThe UDPR is very hard to fine tune with XGBoost. With an NN in Keras, we can fit much better. There are still some very bad apples in our data/predictions bur the performance is overall/on average much better.\n\nBoth approaches are provided in the Jupyter notebook for this repo (`Train.ipynb`). Run using `jupyter notebook` from this repo's root folder in the terminal.\n\nYou can find more info on the datasets in UCI's database. ([info for Parkinsons detection](https://archive.ics.uci.edu/ml/machine-learning-databases/parkinsons/parkinsons.names)) ([info for UDPR](https://archive.ics.uci.edu/ml/machine-learning-databases/parkinsons/telemonitoring/parkinsons_updrs.names))\n\n## Requirements\n\n- Python 3 (I **highly** recommend using Anaconda as this will save you a TON of time)\n- XGBoost (`pip install xgboost`)\n- Keras (`pip install keras`)\n- sklearn (`pip install scikit-learn`)\n- Jupyter ([instructions](http://jupyter.org/install))\n- Pandas (`pip install pandas`)\n- NumPy (`pip install numpy`)\n- Tensorflow or another Keras backend (`pip install tensorflow` or for GPU assuming CUDA and CUDNN already installed and in PATH, `pip install tensorflow-gpu`)\n\n\n## Credits\n\nI don't own this dataset, it's provided in the link earlier.\n\nCitations for the datasets used:\n\n```\n'Exploiting Nonlinear Recurrence and Fractal Scaling Properties for Voice Disorder Detection', \nLittle MA, McSharry PE, Roberts SJ, Costello DAE, Moroz IM. \nBioMedical Engineering OnLine 2007, 6:23 (26 June 2007)\n```\n\n```\nA Tsanas, MA Little, PE McSharry, LO Ramig (2009)\n'Accurate telemonitoring of Parkinson.s disease progression by non-invasive speech tests',\nIEEE Transactions on Biomedical Engineering (to appear).\n```\n\n**If you use this repo please cite it:**\n\n```\nCuuupid 💔. (2018, April 4). Detecting Parkinsons with AI (Version DOI). Zenodo. \nhttp://doi.org/10.5281/zenodo.1211859\n```\n\nBibtex:\n```\n@misc{cuuupid_loves_you_2018_1211859,\n  author       = {Cuuupid 💔},\n  title        = {Detecting Parkinsons with AI},\n  month        = apr,\n  year         = 2018,\n  doi          = {10.5281/zenodo.1211859},\n  url          = {https://doi.org/10.5281/zenodo.1211859}\n}\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcuuupid%2Fparkinsons-ai","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcuuupid%2Fparkinsons-ai","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcuuupid%2Fparkinsons-ai/lists"}