{"id":28271045,"url":"https://github.com/cytomining/cytominergallery","last_synced_at":"2025-09-05T11:49:20.129Z","repository":{"id":47300925,"uuid":"67816793","full_name":"cytomining/cytominergallery","owner":"cytomining","description":"[Deprecated] A Gallery of Cytominer Vignettes","archived":true,"fork":false,"pushed_at":"2022-07-20T14:55:42.000Z","size":10491,"stargazers_count":1,"open_issues_count":5,"forks_count":6,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-05-31T11:47:48.045Z","etag":null,"topics":["microscopy","profiling","vignette"],"latest_commit_sha":null,"homepage":"https://cytomining.github.io/cytominergallery/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cytomining.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-09-09T17:00:10.000Z","updated_at":"2024-09-13T16:41:10.000Z","dependencies_parsed_at":"2022-09-06T07:11:04.886Z","dependency_job_id":null,"html_url":"https://github.com/cytomining/cytominergallery","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/cytomining/cytominergallery","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fcytominergallery","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fcytominergallery/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fcytominergallery/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fcytominergallery/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","download_url":"https://codeload.github.com/cytomining/cytominergallery/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fcytominergallery/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273753793,"owners_count":25161912,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["microscopy","profiling","vignette"],"created_at":"2025-05-20T17:24:37.823Z","updated_at":"2025-09-05T11:49:20.112Z","avatar_url":"https://github.com/cytomining.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Travis-CI Build Status](https://travis-ci.org/cytomining/cytominergallery.svg?branch=master)](https://travis-ci.org/cytomining/cytominergallery)\n\n# cytominer gallery\n\n## Installation\n\nInstall [R](https://www.r-project.org) and [RStudio](https://www.rstudio.com/).\n\nDownload this [sqlite](https://s3.amazonaws.com/imaging-platform-collaborator/2016_09_09_cytominer_workshop/ljosa_jbiomolscreen_2013.sqlite) file into `~/Downloads` (required by the vignette `single_cell_analysis`).\n\nInstall the `cytominergallery` package from GitHub:\n\n```R\n# install.packages(\"devtools\")\ndevtools::install_github(\"cytomining/cytominergallery\", dependencies = TRUE, build_vignettes = TRUE)\n```\n\nYou may need to do run that again in order to build the vignettes correctly (seems like a bug in `install_github`):\n```R\ndevtools::install_github(\"cytomining/cytominergallery\", dependencies = TRUE, build_vignettes = TRUE, force = TRUE)\n```\n\nOccasionally, the `Suggests` dependencies [may not get installed](https://github.com/hadley/devtools/issues/1370), depending on your system, so you'd need to install those explicitly.\n\nBrowse vignettes (launches in default browser):\n```R\nbrowseVignettes()\n```\n\nSearch for \"Vignettes in package cytominergallery\" and click on the link `HTML` to view the vignettes.\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcytomining%2Fcytominergallery","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fcytomining%2Fcytominergallery","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fcytomining%2Fcytominergallery/lists"}